Dihedral/Index
From Proteopedia
(Difference between revisions)
(images for illustration) |
m (enhancements) |
||
| Line 6: | Line 6: | ||
[[Image:Ramachandran plot general 100K.jpg|right|200px]] | [[Image:Ramachandran plot general 100K.jpg|right|200px]] | ||
| - | * | + | * '''Definition of phi and psi''', [http://biomodel.uah.es/model5/prot/diedros_en.htm in English] and [http://biomodel.uah.es/model5/prot/diedros.htm Spanish]. A very simple display, illustrated with simplified 3D models. |
| - | * [[Dihedral/Dihedral_angles_in_proteins|Dihedral angles in proteins]]: an interactive display of phi and psi dihedral angles using a model of a tripeptide. | + | * '''[[Dihedral/Dihedral_angles_in_proteins|Dihedral angles in proteins]]''': an interactive display of phi and psi dihedral angles using a model of a tripeptide. |
** A regular page in Proteopedia. | ** A regular page in Proteopedia. | ||
** Simple presentation, featuring a 3D model with planes, clashes and animations. | ** Simple presentation, featuring a 3D model with planes, clashes and animations. | ||
| - | * [[Phi and Psi Angles]]: guided explanation of determination and display of angles in the 3D model. | + | * '''[[Phi and Psi Angles]]''': a more detailed, guided explanation of determination and display of angles in the 3D model. |
| + | ** A regular page in Proteopedia. | ||
| - | * The [[Ramachandran Plot]] | + | * '''The [[Ramachandran Plot]]''' |
** A regular page in Proteopedia. Featured in an article in Biochemistry and Molecular Biology Education, 2010. | ** A regular page in Proteopedia. Featured in an article in Biochemistry and Molecular Biology Education, 2010. | ||
** Extensive description. | ** Extensive description. | ||
| - | * [[Tutorial:Ramachandran_Plot_Inspection|Ramachandran Plot Inspection]] | + | * '''[[Tutorial:Ramachandran_Plot_Inspection|Ramachandran Plot Inspection]]''' |
** A special "Tutorial" page in Proteopedia (by [[User:Angel_Herraez|Angel Herráez]]) | ** A special "Tutorial" page in Proteopedia (by [[User:Angel_Herraez|Angel Herráez]]) | ||
** Interactive Ramachandran plot with many controls and details, connecting the Ramachandran plot with the display on the 3D model. Includes planes, clashes and animations. | ** Interactive Ramachandran plot with many controls and details, connecting the Ramachandran plot with the display on the 3D model. Includes planes, clashes and animations. | ||
| - | * [[Tutorial:Ramachandran_principle_and_phi_psi_angles|The Ramachandran Principle, Phi (φ) and Psi (ψ) Angles in Proteins ]] | + | * '''[[Tutorial:Ramachandran_principle_and_phi_psi_angles|The Ramachandran Principle, Phi (φ) and Psi (ψ) Angles in Proteins]]''' |
** A special "Tutorial" page in Proteopedia (by [[User:Eric_Martz|Eric Martz]]) | ** A special "Tutorial" page in Proteopedia (by [[User:Eric_Martz|Eric Martz]]) | ||
** That tutorial repurposed as a [http://tinyurl.com/RamachandranPrinciple slideshow] in English (a Google Docs presentation) | ** That tutorial repurposed as a [http://tinyurl.com/RamachandranPrinciple slideshow] in English (a Google Docs presentation) | ||
| Line 31: | Line 32: | ||
* [http://clfs690.alivetek.org/CLFS690/amino/animballjmol.htm Another animation] of phi and psi angles connected to a Ramachandran plot (by David Jollie) | * [http://clfs690.alivetek.org/CLFS690/amino/animballjmol.htm Another animation] of phi and psi angles connected to a Ramachandran plot (by David Jollie) | ||
| - | * [[Ramachandran outlier]] showcases | + | * [[Ramachandran outlier]] showcases a special case where a residue is not conforming to the favored values in the Ramachandran plot. |
Revision as of 14:34, 27 June 2018
Dihedral angles in proteins and the Ramachandran plot
This in an index page pointing to several resources on these topics.
- Definition of phi and psi, in English and Spanish. A very simple display, illustrated with simplified 3D models.
- Dihedral angles in proteins: an interactive display of phi and psi dihedral angles using a model of a tripeptide.
- A regular page in Proteopedia.
- Simple presentation, featuring a 3D model with planes, clashes and animations.
- Phi and Psi Angles: a more detailed, guided explanation of determination and display of angles in the 3D model.
- A regular page in Proteopedia.
- The Ramachandran Plot
- A regular page in Proteopedia. Featured in an article in Biochemistry and Molecular Biology Education, 2010.
- Extensive description.
- Ramachandran Plot Inspection
- A special "Tutorial" page in Proteopedia (by Angel Herráez)
- Interactive Ramachandran plot with many controls and details, connecting the Ramachandran plot with the display on the 3D model. Includes planes, clashes and animations.
- The Ramachandran Principle, Phi (φ) and Psi (ψ) Angles in Proteins
- A special "Tutorial" page in Proteopedia (by Eric Martz)
- That tutorial repurposed as a slideshow in English (a Google Docs presentation)
- That tutorial repurposed as a slideshow in Spanish (a Google Docs presentation)
- Quiz in English
- Quiz in Spanish
- Another animation of phi and psi angles connected to a Ramachandran plot (by David Jollie)
- Ramachandran outlier showcases a special case where a residue is not conforming to the favored values in the Ramachandran plot.
