5ogx
From Proteopedia
(Difference between revisions)
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<StructureSection load='5ogx' size='340' side='right' caption='[[5ogx]], [[Resolution|resolution]] 1.72Å' scene=''> | <StructureSection load='5ogx' size='340' side='right' caption='[[5ogx]], [[Resolution|resolution]] 1.72Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[5ogx]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OGX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5OGX FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5ogx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Amycolatopsis_methanolica_239 Amycolatopsis methanolica 239]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OGX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5OGX FirstGlance]. <br> |
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BR:BROMIDE+ION'>BR</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BR:BROMIDE+ION'>BR</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | ||
+ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ascD, AMETH_3833 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1068978 Amycolatopsis methanolica 239])</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ogx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ogx OCA], [http://pdbe.org/5ogx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ogx RCSB], [http://www.ebi.ac.uk/pdbsum/5ogx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ogx ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ogx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ogx OCA], [http://pdbe.org/5ogx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ogx RCSB], [http://www.ebi.ac.uk/pdbsum/5ogx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ogx ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Microbial aromatic catabolism offers a promising approach to convert lignin, a vast source of renewable carbon, into useful products. Aryl-O-demethylation is an essential biochemical reaction to ultimately catabolize coniferyl and sinapyl lignin-derived aromatic compounds, and is often a key bottleneck for both native and engineered bioconversion pathways. Here, we report the comprehensive characterization of a promiscuous P450 aryl-O-demethylase, consisting of a cytochrome P450 protein from the family CYP255A (GcoA) and a three-domain reductase (GcoB) that together represent a new two-component P450 class. Though originally described as converting guaiacol to catechol, we show that this system efficiently demethylates both guaiacol and an unexpectedly wide variety of lignin-relevant monomers. Structural, biochemical, and computational studies of this novel two-component system elucidate the mechanism of its broad substrate specificity, presenting it as a new tool for a critical step in biological lignin conversion. | ||
+ | |||
+ | A promiscuous cytochrome P450 aromatic O-demethylase for lignin bioconversion.,Mallinson SJB, Machovina MM, Silveira RL, Garcia-Borras M, Gallup N, Johnson CW, Allen MD, Skaf MS, Crowley MF, Neidle EL, Houk KN, Beckham GT, DuBois JL, McGeehan JE Nat Commun. 2018 Jun 27;9(1):2487. doi: 10.1038/s41467-018-04878-2. PMID:29950589<ref>PMID:29950589</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 5ogx" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Amycolatopsis methanolica 239]] | ||
[[Category: Beckham, G T]] | [[Category: Beckham, G T]] | ||
[[Category: Johnson, C W]] | [[Category: Johnson, C W]] |
Revision as of 06:05, 11 July 2018
Crystal structure of Amycolatopsis cytochrome P450 reductase GcoB.
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Categories: Amycolatopsis methanolica 239 | Beckham, G T | Johnson, C W | Mallinson, S J.B | McGeehan, J E | Neidle, E L | Amycolatopsis | Cyp255a | Cytochrome | Guaiacol | Haem | Heme | Lignin | Oxidoreductase | P450