2pbk
From Proteopedia
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|PDB= 2pbk |SIZE=350|CAPTION= <scene name='initialview01'>2pbk</scene>, resolution 1.73Å | |PDB= 2pbk |SIZE=350|CAPTION= <scene name='initialview01'>2pbk</scene>, resolution 1.73Å | ||
|SITE= | |SITE= | ||
| - | |LIGAND= <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand= | + | |LIGAND= <scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GG7:[(1R)-1-AMINOETHYL]PHOSPHONIC+ACID'>GG7</scene>, <scene name='pdbligand=TBG:T-BUTYL+GLYCINE'>TBG</scene> |
|ACTIVITY= | |ACTIVITY= | ||
| - | |GENE= AF010430 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id= | + | |GENE= AF010430 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=37296 Human herpesvirus 8]) |
| + | |DOMAIN= | ||
| + | |RELATEDENTRY=[[1fl1|1FL1]] | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pbk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pbk OCA], [http://www.ebi.ac.uk/pdbsum/2pbk PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2pbk RCSB]</span> | ||
}} | }} | ||
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==About this Structure== | ==About this Structure== | ||
| - | 2PBK is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/ | + | 2PBK is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Human_herpesvirus_8 Human herpesvirus 8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PBK OCA]. |
==Reference== | ==Reference== | ||
Substrate modulation of enzyme activity in the herpesvirus protease family., Lazic A, Goetz DH, Nomura AM, Marnett AB, Craik CS, J Mol Biol. 2007 Nov 2;373(4):913-23. Epub 2007 Aug 16. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17870089 17870089] | Substrate modulation of enzyme activity in the herpesvirus protease family., Lazic A, Goetz DH, Nomura AM, Marnett AB, Craik CS, J Mol Biol. 2007 Nov 2;373(4):913-23. Epub 2007 Aug 16. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17870089 17870089] | ||
| - | [[Category: Human herpesvirus | + | [[Category: Human herpesvirus 8]] |
[[Category: Single protein]] | [[Category: Single protein]] | ||
[[Category: Goetz, D H.]] | [[Category: Goetz, D H.]] | ||
[[Category: Lazic, A.]] | [[Category: Lazic, A.]] | ||
| - | [[Category: ACE]] | ||
| - | [[Category: ACT]] | ||
| - | [[Category: GG7]] | ||
[[Category: herpesvirus protease]] | [[Category: herpesvirus protease]] | ||
[[Category: kshv]] | [[Category: kshv]] | ||
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[[Category: viral protein]] | [[Category: viral protein]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:33:57 2008'' |
Revision as of 01:33, 31 March 2008
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| , resolution 1.73Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | , , , | ||||||
| Gene: | AF010430 (Human herpesvirus 8) | ||||||
| Related: | 1FL1
| ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Crystal structure of KSHV protease in complex with hexapeptide phosphonate inhibitor
Overview
The herpesvirus proteases are an example in which allosteric regulation of an enzyme activity is achieved through the formation of quaternary structure. Here, we report a 1.7 A resolution structure of Kaposi's sarcoma-associated herpesvirus protease in complex with a hexapeptide transition state analogue that stabilizes the dimeric state of the enzyme. Extended substrate binding sites are induced upon peptide binding. In particular, 104 A2 of surface are buried in the newly formed S4 pocket when tyrosine binds at this site. The peptide inhibitor also induces a rearrangement of residues that stabilizes the oxyanion hole and the dimer interface. Concomitant with the structural changes, an increase in catalytic efficiency of the enzyme results upon extended substrate binding. A nearly 20-fold increase in kcat/KM results upon extending the peptide substrate from a tetrapeptide to a hexapeptide exclusively due to a KM effect. This suggests that the mechanism by which herpesvirus proteases achieve their high specificity is by using extended substrates to modulate both the structure and activity of the enzyme.
About this Structure
2PBK is a Single protein structure of sequence from Human herpesvirus 8. Full crystallographic information is available from OCA.
Reference
Substrate modulation of enzyme activity in the herpesvirus protease family., Lazic A, Goetz DH, Nomura AM, Marnett AB, Craik CS, J Mol Biol. 2007 Nov 2;373(4):913-23. Epub 2007 Aug 16. PMID:17870089
Page seeded by OCA on Mon Mar 31 04:33:57 2008
