6dw2

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'''Unreleased structure'''
 
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The entry 6dw2 is ON HOLD until Paper Publication
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==Structure of the 6078 Antibody Fab fragment bound to a Staphylococcus aureus wall techoic acid analog==
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<StructureSection load='6dw2' size='340' side='right' caption='[[6dw2]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6dw2]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DW2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6DW2 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HD4:4-O-[2-(acetylamino)-2-deoxy-beta-D-glucopyranosyl]-1-O-phosphono-D-ribitol'>HD4</scene>, <scene name='pdbligand=MLA:MALONIC+ACID'>MLA</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6dw2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dw2 OCA], [http://pdbe.org/6dw2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6dw2 RCSB], [http://www.ebi.ac.uk/pdbsum/6dw2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6dw2 ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Infections caused by methicillin-resistant Staphylococcus aureus (MRSA) are a growing health threat worldwide. Efforts to identify novel antibodies that target S. aureus cell surface antigens are a promising direction in the development of antibiotics that can halt MRSA infection. We biochemically and structurally characterized three patient-derived MRSA-targeting antibodies that bind to wall teichoic acid (WTA), which is a polyanionic surface glycopolymer. In S. aureus, WTA exists in both alpha- and beta-forms, based on the stereochemistry of attachment of a N-acetylglucosamine residue to the repeating phosphoribitol sugar unit. We identified a panel of antibodies cloned from human patients that specifically recognize the alpha or beta form of WTA, and can bind with high affinity to pathogenic wild-type strains of S. aureus bacteria. To investigate how the beta-WTA specific antibodies interact with their target epitope, we determined the X-ray crystal structures of the three beta-WTA specific antibodies, 4462, 4497, and 6078 (Protein Data Bank IDs 6DWI, 6DWA, and 6DW2, respectively), bound to a synthetic WTA epitope. These structures reveal that all three of these antibodies, while utilizing distinct antibody complementarity-determining region sequences and conformations to interact with beta-WTA, fulfill two recognition principles: binding to the beta-GlcNAc pyranose core and triangulation of WTA phosphate residues with polar contacts. These studies reveal the molecular basis for targeting a unique S. aureus cell surface epitope and highlight the power of human patient-based antibody discovery techniques for finding novel pathogen-targeting therapeutics.
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Authors: Fong, R., Lupardus, P.J.
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Structural investigation of human S. aureus-targeting antibodies that bind wall teichoic acid.,Fong R, Kajihara K, Chen M, Hotzel I, Mariathasan S, Hazenbos WLW, Lupardus PJ MAbs. 2018 Aug 13:1-13. doi: 10.1080/19420862.2018.1501252. PMID:30102105<ref>PMID:30102105</ref>
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Description: Structure of the 6078 Antibody Fab fragment bound to a Staphylococcus aureus wall techoic acid analog
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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<div class="pdbe-citations 6dw2" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Fong, R]]
[[Category: Fong, R]]
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[[Category: Lupardus, P.J]]
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[[Category: Lupardus, P J]]
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[[Category: Antibody]]
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[[Category: Fab]]
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[[Category: Immune system]]
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[[Category: Staphylococcus aureus]]
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[[Category: Wall teichoic acid]]
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[[Category: Wta]]

Revision as of 07:29, 29 August 2018

Structure of the 6078 Antibody Fab fragment bound to a Staphylococcus aureus wall techoic acid analog

6dw2, resolution 1.70Å

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