6ezz

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m (Protected "6ezz" [edit=sysop:move=sysop])
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'''Unreleased structure'''
 
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The entry 6ezz is ON HOLD
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==Crystal structure of Escherichia coli amine oxidase mutant E573Q==
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<StructureSection load='6ezz' size='340' side='right' caption='[[6ezz]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6ezz]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6EZZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6EZZ FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1dyu|1dyu]]</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Primary-amine_oxidase Primary-amine oxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.3.21 1.4.3.21] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6ezz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ezz OCA], [http://pdbe.org/6ezz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ezz RCSB], [http://www.ebi.ac.uk/pdbsum/6ezz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ezz ProSAT]</span></td></tr>
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</table>
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== Function ==
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[[http://www.uniprot.org/uniprot/AMO_ECOLI AMO_ECOLI]] The enzyme prefers aromatic over aliphatic amines.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Copper amine oxidases (CuAOs) are metalloenzymes that reduce molecular oxygen to hydrogen peroxide during catalytic turnover of primary amines. In addition to Cu(2+) in the active site, two peripheral calcium sites, approximately 32 A from the active site, have roles in Escherichia coli amine oxidase (ECAO). The buried Ca(2+) (Asp533, Leu534, Asp535, Asp678, and Ala679) is essential for full-length protein production, while the surface Ca(2+) (Glu573, Tyr667, Asp670, and Glu672) modulates biogenesis of the 2,4,5-trihydroxyphenylalanine quinone (TPQ) cofactor. The E573Q mutation at the surface site prevents calcium binding and TPQ biogenesis. However, TPQ biogenesis can be restored by a suppressor mutation (I342F) in the proposed oxygen delivery channel to the active site. While supporting TPQ biogenesis ( approximately 60% WTECAO TPQ), I342F/E573Q has almost no amine oxidase activity ( approximately 4.6% WTECAO activity). To understand how these long-range mutations have major effects on TPQ biogenesis and catalysis, we employed ultraviolet-visible spectroscopy, steady-state kinetics, inhibition assays, and X-ray crystallography. We show that the surface metal site controls the equilibrium (disproportionation) of the Cu(2+)-substrate reduced TPQ (TPQAMQ) Cu(+)-TPQ semiquinone (TPQSQ) couple. Removal of the calcium ion from this site by chelation or mutagenesis shifts the equilibrium to Cu(2+)-TPQAMQ or destabilizes Cu(+)-TPQSQ. Crystal structure analysis shows that TPQ biogenesis is stalled at deprotonation in the Cu(2+)-tyrosinate state. Our findings support WTECAO using the inner sphere electron transfer mechanism for oxygen reduction during catalysis, and while a Cu(+)-tyrosyl radical intermediate is not essential for TPQ biogenesis, it is required for efficient biogenesis.
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Authors: Gaule, T.G., Smith, M.A., Tych, K.M., Pirrat, P., Trinh, C.H., Pearson, A.R., Knowles, P.F., McPherson, M.J.
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Oxygen Activation Switch in the Copper Amine Oxidase of Escherichia coli.,Gaule TG, Smith MA, Tych KM, Pirrat P, Trinh CH, Pearson AR, Knowles PF, McPherson MJ Biochemistry. 2018 Aug 24. doi: 10.1021/acs.biochem.8b00633. PMID:30110143<ref>PMID:30110143</ref>
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Description: Crystal structure of Escherichia coli amine oxidase mutant E573Q
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Tych, K.M]]
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<div class="pdbe-citations 6ezz" style="background-color:#fffaf0;"></div>
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[[Category: Pearson, A.R]]
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== References ==
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[[Category: Mcpherson, M.J]]
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<references/>
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[[Category: Smith, M.A]]
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__TOC__
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[[Category: Knowles, P.F]]
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</StructureSection>
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[[Category: Primary-amine oxidase]]
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[[Category: Gaule, T G]]
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[[Category: Knowles, P F]]
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[[Category: McPherson, M J]]
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[[Category: Pearson, A R]]
[[Category: Pirrat, P]]
[[Category: Pirrat, P]]
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[[Category: Gaule, T.G]]
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[[Category: Smith, M A]]
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[[Category: Trinh, C.H]]
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[[Category: Trinh, C H]]
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[[Category: Tych, K M]]
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[[Category: Oxidoreductase]]

Revision as of 07:30, 29 August 2018

Crystal structure of Escherichia coli amine oxidase mutant E573Q

6ezz, resolution 1.80Å

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