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Sandbox1742
From Proteopedia
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==Activity#1: Properties of Water== | ==Activity#1: Properties of Water== | ||
<StructureSection load='Waters-5c.pdb' size='340' side='right' caption='Caption for this structure' scene=''> | <StructureSection load='Waters-5c.pdb' size='340' side='right' caption='Caption for this structure' scene=''> | ||
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| + | This structure file represents five water molecules in the liquid state. Use the green links in the text below to change the kind of representations of these water molecules and to help you answer the questions in your Activity #1 handout. | ||
This is a default text for your page '''Sandbox1742'''. Click above on '''edit this page''' to modify. Be careful with the < and > signs. | This is a default text for your page '''Sandbox1742'''. Click above on '''edit this page''' to modify. Be careful with the < and > signs. | ||
You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue. | You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue. | ||
| - | == | + | == Representations== |
| + | The default representation is called <scene name='79/795974/Ball-and-stick/1'>"ball-and-stick"</scene>. | ||
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| + | Another very common representation is known as "spacefill". Explore the different levels of "spacefill" for these molecules. | ||
| + | <scene name='79/795974/Spacefill_20/1'>spacefill 20%</scene> | ||
| + | <scene name='79/795974/Spacefill_50/1'>spacefill 50%</scene> | ||
| + | <scene name='79/795974/Spacefill_100/1'>spacefill 100%</scene> | ||
== Disease == | == Disease == | ||
Revision as of 07:24, 31 August 2018
Activity#1: Properties of Water
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References
- ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
- ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
