Ribosome biogenesis protein
From Proteopedia
(Difference between revisions)
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| - | <StructureSection load='3hay' size=' | + | <StructureSection load='3hay' size='350' side='right' |
caption=' Ribosome biogenesis protein (PDB code [[3hay]]) ' scene='77/776387/Cv/1'> | caption=' Ribosome biogenesis protein (PDB code [[3hay]]) ' scene='77/776387/Cv/1'> | ||
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**[[1y2y]] – yNop10 - NMR<br /> | **[[1y2y]] – yNop10 - NMR<br /> | ||
**[[5t9p]] – yNop15 <br /> | **[[5t9p]] – yNop15 <br /> | ||
| - | **[[5sui]], [[5sum]] – yNsa1 <br /> | + | **[[5sui]], [[5sum]], [[6en7]] – yNsa1 <br /> |
**[[5ydu]] – yUtp30 <br /> | **[[5ydu]] – yUtp30 <br /> | ||
**[[5dtc]] – yYtm1 <br /> | **[[5dtc]] – yYtm1 <br /> | ||
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**[[3hjw]], [[3lwo]], [[3lwq]], [[3lwr]], [[3lwv]], [[3lwp]], [[3hax]] – PfNop10 + pseudouridine synthase + RNA + ribosomal protein L7AE<br /> | **[[3hjw]], [[3lwo]], [[3lwq]], [[3lwr]], [[3lwv]], [[3lwp]], [[3hax]] – PfNop10 + pseudouridine synthase + RNA + ribosomal protein L7AE<br /> | ||
**[[4clq]] – yBms1 + Rcl1P <br /> | **[[4clq]] – yBms1 + Rcl1P <br /> | ||
| + | **[[6cb1]], [[6em4]], [[6em5]], [[6em3]], [[6c0f]], [[6elz]], [[6em1]], [[5z3g]] – yNsa1 + 60S ribosome - Cryo EM <br /> | ||
**[[4wjv]] – yNsa2 + ribosome assembly protein 4 + MBP<br /> | **[[4wjv]] – yNsa2 + ribosome assembly protein 4 + MBP<br /> | ||
| + | **[[5z1g]] – yBrx1 + RRNA-procesing protein<br /> | ||
**[[5ooq]] – yNop53 + ATP-dependent RNA helicase Dob1 <br /> | **[[5ooq]] – yNop53 + ATP-dependent RNA helicase Dob1 <br /> | ||
| + | **[[5z3g]] – yNop53 + 60S ribosome - Cryo EM <br /> | ||
| + | **[[5tzs]], [[5wyj]], [[5wyk]] – yBms1 + 40S ribosome - Cryo EM <br /> | ||
| + | **[[6eml]], [[6fai]] – yTsr1 + 40S ribosome - Cryo EM <br /> | ||
**[[5ydt]] – yUtp30 + RNA – Cryo EM<br /> | **[[5ydt]] – yUtp30 + RNA – Cryo EM<br /> | ||
**[[5cxb]], [[5cxc]], [[5cyk]], [[5em2]] – Ytm1 + Erb1 C-terminal – ''Chaetomium thermophilum''<br /> | **[[5cxb]], [[5cxc]], [[5cyk]], [[5em2]] – Ytm1 + Erb1 C-terminal – ''Chaetomium thermophilum''<br /> | ||
Revision as of 17:20, 14 September 2018
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3D Structures of ribosome biogenesis protein
Updated on 14-September-2018
References
- ↑ Marcin W, Neira JL, Bravo J. The Carboxy-Terminal Domain of Erb1 Is a Seven-Bladed ss-Propeller that Binds RNA. PLoS One. 2015 Apr 16;10(4):e0123463. doi: 10.1371/journal.pone.0123463., eCollection 2015. PMID:25880847 doi:http://dx.doi.org/10.1371/journal.pone.0123463
- ↑ Hamma T, Reichow SL, Varani G, Ferre-D'Amare AR. The Cbf5-Nop10 complex is a molecular bracket that organizes box H/ACA RNPs. Nat Struct Mol Biol. 2005 Dec;12(12):1101-7. Epub 2005 Nov 15. PMID:16286935 doi:10.1038/nsmb1036
- ↑ Hu J, Zhu X, Ye K. Structure and RNA recognition of ribosome assembly factor Utp30. RNA. 2017 Sep 26. pii: rna.062695.117. doi: 10.1261/rna.062695.117. PMID:28951391 doi:http://dx.doi.org/10.1261/rna.062695.117
- ↑ McCaughan UM, Jayachandran U, Shchepachev V, Chen ZA, Rappsilber J, Tollervey D, Cook AG. Pre-40S ribosome biogenesis factor Tsr1 is an inactive structural mimic of translational GTPases. Nat Commun. 2016 Jun 2;7:11789. doi: 10.1038/ncomms11789. PMID:27250689 doi:http://dx.doi.org/10.1038/ncomms11789
- ↑ Taylor AB, Meyer B, Leal BZ, Kotter P, Schirf V, Demeler B, Hart PJ, Entian KD, Wohnert J. The crystal structure of Nep1 reveals an extended SPOUT-class methyltransferase fold and a pre-organized SAM-binding site. Nucleic Acids Res. 2008 Mar;36(5):1542-54. Epub 2008 Jan 21. PMID:18208838 doi:10.1093/nar/gkm1172
- ↑ Delprato A, Al Kadri Y, Perebaskine N, Monfoulet C, Henry Y, Henras AK, Fribourg S. Crucial role of the Rcl1p-Bms1p interaction for yeast pre-ribosomal RNA processing. Nucleic Acids Res. 2014;42(15):10161-72. doi: 10.1093/nar/gku682. Epub 2014 Jul, 26. PMID:25064857 doi:http://dx.doi.org/10.1093/nar/gku682
- ↑ Liang B, Zhou J, Kahen E, Terns RM, Terns MP, Li H. Structure of a functional ribonucleoprotein pseudouridine synthase bound to a substrate RNA. Nat Struct Mol Biol. 2009 Jul;16(7):740-6. Epub 2009 May 28. PMID:19478803 doi:10.1038/nsmb.1624
