Ribozyme
From Proteopedia
(Difference between revisions)
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**[[2r8s]] – RZ P4-P6 domain + antibody – mouse<BR /> | **[[2r8s]] – RZ P4-P6 domain + antibody – mouse<BR /> | ||
**[[1y0q]] – RZ group I + RNA – Staphylococcus phage twort<BR /> | **[[1y0q]] – RZ group I + RNA – Staphylococcus phage twort<BR /> | ||
| - | **[[1x8w]] – TtRZ – ''Tetrahymena thermophilia'' | + | **[[1x8w]] – TtRZ – ''Tetrahymena thermophilia''<BR /> |
| - | **[[1grz]] – TtRZ (mutant) <BR /> | + | **[[1grz]], [[6bjx]], [[6d8l]], [[6d8m]], [[6d8n]], [[6d8o]] – TtRZ (mutant) <BR /> |
**[[1l8v]], [[1gid]] – TtRZ P4-P6 domain<BR /> | **[[1l8v]], [[1gid]] – TtRZ P4-P6 domain<BR /> | ||
**[[1hr2]] - TtRZ P4-P6 domain (mutant) <BR /> | **[[1hr2]] - TtRZ P4-P6 domain (mutant) <BR /> | ||
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**[[5j01]], [[5j02]] - RZ - ''Oceanobacillus iheyensis'' <br/> | **[[5j01]], [[5j02]] - RZ - ''Oceanobacillus iheyensis'' <br/> | ||
| - | + | **[[6ez0]] – yRZ - NMR<BR /> | |
*Various ribozymes | *Various ribozymes | ||
**[[1b36]] – RZ loop B - NMR<BR /> | **[[1b36]] – RZ loop B - NMR<BR /> | ||
| - | **[[2l5z]], [[1e4p]], [[2mis]] – 26-mer of VS RZ | + | **[[5v3i]] – VS RZ – ''Neurospora'' <BR /> |
| + | **[[2l5z]], [[1e4p]], [[2mis]] – 26-mer of VS RZ – NMR<BR /> | ||
**[[1yn1]], [[1yn2]], [[1tbk]], [[1tjz]], [[1hwq]] - VS RZ stem-loop V – NMR<BR /> | **[[1yn1]], [[1yn2]], [[1tbk]], [[1tjz]], [[1hwq]] - VS RZ stem-loop V – NMR<BR /> | ||
**[[5v3i]] - VS RZ <BR /> | **[[5v3i]] - VS RZ <BR /> | ||
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**[[4qjh]], [[5dun]] – twister RZ – synthetic<br /> | **[[4qjh]], [[5dun]] – twister RZ – synthetic<br /> | ||
**[[4rge]], [[4rgf]] – twister RZ env22 – synthetic<br /> | **[[4rge]], [[4rgf]] – twister RZ env22 – synthetic<br /> | ||
| - | **[[5t5a]] – twister sister RZ – Metagenome<br /> | + | **[[5t5a]], [[5y85]], [[5y87]] – twister sister RZ – Metagenome<br /> |
**[[5k7c]],[[5k7d]],[[5k7e]], [[5ktj]] - pistol RZ - synthetic <br/> | **[[5k7c]],[[5k7d]],[[5k7e]], [[5ktj]] - pistol RZ - synthetic <br/> | ||
| + | **[[6gyv]] – lariat-capping RZ – ''Didymium iridis''<BR /> | ||
}} | }} | ||
Revision as of 20:34, 14 September 2018
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3D Structures of Ribozymes
Updated on 14-September-2018
References
- ↑ Tang J, Breaker RR. Rational design of allosteric ribozymes. Chem Biol. 1997 Jun;4(6):453-9. PMID:9224568
- ↑ Amarzguioui M, Prydz H. Hammerhead ribozyme design and application. Cell Mol Life Sci. 1998 Nov;54(11):1175-202. PMID:9849614 doi:http://dx.doi.org/10.1007/s000180050247
- ↑ Cech TR. Self-splicing of group I introns. Annu Rev Biochem. 1990;59:543-68. PMID:2197983 doi:http://dx.doi.org/10.1146/annurev.bi.59.070190.002551
- ↑ Roth A, Weinberg Z, Chen AG, Kim PB, Ames TD, Breaker RR. A widespread self-cleaving ribozyme class is revealed by bioinformatics. Nat Chem Biol. 2014 Jan;10(1):56-60. doi: 10.1038/nchembio.1386. Epub 2013 Nov, 17. PMID:24240507 doi:http://dx.doi.org/10.1038/nchembio.1386
- ↑ Weinberg Z, Kim PB, Chen TH, Li S, Harris KA, Lunse CE, Breaker RR. New classes of self-cleaving ribozymes revealed by comparative genomics analysis. Nat Chem Biol. 2015 Aug;11(8):606-10. doi: 10.1038/nchembio.1846. Epub 2015 Jul, 13. PMID:26167874 doi:http://dx.doi.org/10.1038/nchembio.1846
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