This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2vgk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
==CRYSTAL STRUCTURE OF ACTINOMADURA R39 DD-PEPTIDASE COMPLEXED WITH A PEPTIDOGLYCAN-MIMETIC CEPHALOSPORIN==
+
 
 +
==Crystal structure of Actinomadura R39 DD-peptidase complexed with a peptidoglycan-mimetic cephalosporin==
<StructureSection load='2vgk' size='340' side='right' caption='[[2vgk]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
<StructureSection load='2vgk' size='340' side='right' caption='[[2vgk]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
Line 6: Line 7:
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1w79|1w79]], [[1w8q|1w8q]], [[2vgj|2vgj]], [[1w8y|1w8y]]</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1w79|1w79]], [[1w8q|1w8q]], [[2vgj|2vgj]], [[1w8y|1w8y]]</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Serine-type_D-Ala-D-Ala_carboxypeptidase Serine-type D-Ala-D-Ala carboxypeptidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.16.4 3.4.16.4] </span></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Serine-type_D-Ala-D-Ala_carboxypeptidase Serine-type D-Ala-D-Ala carboxypeptidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.16.4 3.4.16.4] </span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vgk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vgk OCA], [http://pdbe.org/2vgk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vgk RCSB], [http://www.ebi.ac.uk/pdbsum/2vgk PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vgk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vgk OCA], [http://pdbe.org/2vgk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vgk RCSB], [http://www.ebi.ac.uk/pdbsum/2vgk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vgk ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
Line 14: Line 15:
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vg/2vgk_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vg/2vgk_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 31: Line 32:
==See Also==
==See Also==
-
*[[Penicillin-binding protein|Penicillin-binding protein]]
+
*[[Carboxypeptidase|Carboxypeptidase]]
== References ==
== References ==
<references/>
<references/>
Line 40: Line 41:
[[Category: Charlier, P]]
[[Category: Charlier, P]]
[[Category: Herman, R]]
[[Category: Herman, R]]
-
[[Category: Kerff, F]]
 
[[Category: Sauvage, E]]
[[Category: Sauvage, E]]
 +
[[Category: Kerff, F]]
[[Category: Actinomadura]]
[[Category: Actinomadura]]
[[Category: Antibiotic resistance]]
[[Category: Antibiotic resistance]]

Revision as of 20:41, 19 September 2018

Crystal structure of Actinomadura R39 DD-peptidase complexed with a peptidoglycan-mimetic cephalosporin

2vgk, resolution 2.25Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools