This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2vpw
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
| - | == | + | |
| + | ==Polysulfide reductase with bound menaquinone== | ||
<StructureSection load='2vpw' size='340' side='right' caption='[[2vpw]], [[Resolution|resolution]] 3.10Å' scene=''> | <StructureSection load='2vpw' size='340' side='right' caption='[[2vpw]], [[Resolution|resolution]] 3.10Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| Line 5: | Line 6: | ||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE+GUANOSINE+DINUCLEOTIDE'>MGD</scene>, <scene name='pdbligand=MO:MOLYBDENUM+ATOM'>MO</scene>, <scene name='pdbligand=MQ7:MENAQUINONE-7'>MQ7</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE+GUANOSINE+DINUCLEOTIDE'>MGD</scene>, <scene name='pdbligand=MO:MOLYBDENUM+ATOM'>MO</scene>, <scene name='pdbligand=MQ7:MENAQUINONE-7'>MQ7</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr> | ||
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2vpx|2vpx]], [[2vpy|2vpy]], [[2vpz|2vpz]]</td></tr> | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2vpx|2vpx]], [[2vpy|2vpy]], [[2vpz|2vpz]]</td></tr> | ||
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vpw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vpw OCA], [http://pdbe.org/2vpw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vpw RCSB], [http://www.ebi.ac.uk/pdbsum/2vpw PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vpw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vpw OCA], [http://pdbe.org/2vpw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vpw RCSB], [http://www.ebi.ac.uk/pdbsum/2vpw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vpw ProSAT]</span></td></tr> |
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
| Line 11: | Line 12: | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vp/2vpw_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vp/2vpw_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
| Line 39: | Line 40: | ||
[[Category: Yano, T]] | [[Category: Yano, T]] | ||
[[Category: Yokoyama, K]] | [[Category: Yokoyama, K]] | ||
| + | [[Category: 4fe-4]] | ||
[[Category: Iron]] | [[Category: Iron]] | ||
[[Category: Iron-sulfur]] | [[Category: Iron-sulfur]] | ||
Revision as of 21:26, 19 September 2018
Polysulfide reductase with bound menaquinone
| |||||||||||
Categories: Thermus thermophilus | Akimoto, S | Curmi, P | Iwata, S | Jormakka, M | Shimamura, T | Tamakoshi, M | Yano, T | Yokoyama, K | 4fe-4 | Iron | Iron-sulfur | Membrane protein | Metal-binding | Molybdenum | Oxidoreductase | Respiratory enzyme

