6g46
From Proteopedia
(Difference between revisions)
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- | '''Unreleased structure''' | ||
- | + | ==Red kidney bean purple acid phosphatase in complex with 2-(Naphthalen-1-yl)thiazole-4-carboxylic acid== | |
+ | <StructureSection load='6g46' size='340' side='right' caption='[[6g46]], [[Resolution|resolution]] 2.40Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[6g46]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Phaseolus_vulgaris Phaseolus vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6G46 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6G46 FirstGlance]. <br> | ||
+ | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=ELH:2-naphthalen-1-yl-1,3-thiazole-4-carboxylic+acid'>ELH</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | ||
+ | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acid_phosphatase Acid phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.2 3.1.3.2] </span></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6g46 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6g46 OCA], [http://pdbe.org/6g46 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6g46 RCSB], [http://www.ebi.ac.uk/pdbsum/6g46 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6g46 ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Purple acid phosphatases (PAPs) are metalloenzymes that catalyse the hydrolysis of phosphate esters under acidic conditions. Their active site contains a Fe(III)Fe(II) metal centre in mammals and a Fe(III)Zn(II) or Fe(III)Mn(II) metal centre in plants. In humans, elevated PAP levels in serum strongly correlate with the progression of osteoporosis and metabolic bone malignancies, which make PAP a target suitable for the development of chemotherapeutics to combat bone ailments. Due to difficulties in obtaining the human enzyme, the corresponding enzymes from red kidney bean and pig have been used previously to develop specific PAP inhibitors. Here, existing lead compounds were further elaborated to create a series of inhibitors with Ki values as low as approximately 30muM. The inhibition constants of these compounds were of comparable magnitude for pig and red kidney bean PAPs, indicating that relevant binding interactions are conserved. The crystal structure of red kidney bean PAP in complex with the most potent inhibitor in this series, compound 4f, was solved to 2.40A resolution. This inhibitor coordinates directly to the binuclear metal centre in the active site as expected based on its competitive mode of inhibition. Docking simulations predict that this compound binds to human PAP in a similar mode. This study presents the first example of a PAP structure in complex with an inhibitor that is of relevance to the development of anti-osteoporotic chemotherapeutics. | ||
- | + | Purple acid phosphatase inhibitors as leads for osteoporosis chemotherapeutics.,Hussein WM, Feder D, Schenk G, Guddat LW, McGeary RP Eur J Med Chem. 2018 Aug 3;157:462-479. doi: 10.1016/j.ejmech.2018.08.004. PMID:30107365<ref>PMID:30107365</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
- | [[Category: Feder, D | + | <div class="pdbe-citations 6g46" style="background-color:#fffaf0;"></div> |
+ | == References == | ||
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
+ | [[Category: Acid phosphatase]] | ||
+ | [[Category: Phaseolus vulgaris]] | ||
+ | [[Category: Feder, D F]] | ||
+ | [[Category: Drug design]] | ||
+ | [[Category: Drug discovery]] | ||
+ | [[Category: Hydrolase]] | ||
+ | [[Category: Metal binding protein]] | ||
+ | [[Category: Metallohydrolase]] | ||
+ | [[Category: Metalloprotein]] | ||
+ | [[Category: Osteoporosis]] | ||
+ | [[Category: Pap]] | ||
+ | [[Category: Phosphatase]] | ||
+ | [[Category: Purple acid phosphatase]] | ||
+ | [[Category: Rational drug design]] | ||
+ | [[Category: Red kidney bean]] | ||
+ | [[Category: Rkbpap]] |
Revision as of 08:12, 26 September 2018
Red kidney bean purple acid phosphatase in complex with 2-(Naphthalen-1-yl)thiazole-4-carboxylic acid
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