2ri8
From Proteopedia
(New page: 200px {{Structure |PDB= 2ri8 |SIZE=350|CAPTION= <scene name='initialview01'>2ri8</scene>, resolution 2.16Å |SITE= <scene name='pdbsite=AC1:Nag+Binding+Site+...) |
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|GENE= MSDC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5077 Penicillium citrinum]) | |GENE= MSDC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5077 Penicillium citrinum]) | ||
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam01532 Glyco_hydro_47]</span> | |DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam01532 Glyco_hydro_47]</span> | ||
| - | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ri8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ri8 OCA], [http://www.ebi.ac.uk/pdbsum/2ri8 PDBsum | + | |RELATEDENTRY=[[1kkt|1kkt]], [[1kre|1kre]], [[1krf|1krf]], [[2ri9|2RI9]] |
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ri8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ri8 OCA], [http://www.ebi.ac.uk/pdbsum/2ri8 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2ri8 RCSB]</span> | ||
}} | }} | ||
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[[Category: secreted]] | [[Category: secreted]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:00:41 2008'' |
Revision as of 02:00, 31 March 2008
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| , resolution 2.16Å | |||||||
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| Sites: | , , , , , , , , , , , , , , , , , , , , , , and | ||||||
| Ligands: | , , , | ||||||
| Gene: | MSDC (Penicillium citrinum) | ||||||
| Activity: | Mannosyl-oligosaccharide 1,2-alpha-mannosidase, with EC number 3.2.1.113 | ||||||
| Domains: | Glyco_hydro_47 | ||||||
| Related: | 1kkt, 1kre, 1krf, 2RI9
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| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Penicillium citrinum alpha-1,2-mannosidase complex with glycerol
Overview
Class I alpha-mannosidases (glycoside hydrolase family GH47) play key roles in the maturation of N-glycans and the ER-associated degradation of unfolded glycoproteins. The 1.95 A resolution structure of a fungal alpha-1,2-mannosidase in complex with the substrate analogue methyl-alpha-D-lyxopyranosyl-(1',2)-alpha-D-mannopyranoside (LM) shows the intact disaccharide spanning the -1/+1 subsites, with the D-lyxoside ring in the -1 subsite in the (1)C(4) chair conformation, and provides insight into the mechanism of catalysis. The absence of the C5' hydroxymethyl group on the D-lyxoside moiety results in the side chain of Arg407 adopting two alternative conformations: the minor one interacting with Asp375 and the major one interacting with both the D-lyxoside and the catalytic base Glu409, thus disrupting its function. Chemical modification of Asp375 has previously been shown to inactivate the enzyme. Taken together, the data suggest that Arg407, which belongs to the conserved sequence motif RPExxE, may act to modulate the activity of the enzyme. The proposed mechanism for modulating the activity is potentially a general mechanism for this superfamily.
About this Structure
2RI8 is a Single protein structure of sequence from Penicillium citrinum. Full crystallographic information is available from OCA.
Reference
Modulation of activity by Arg407: structure of a fungal alpha-1,2-mannosidase in complex with a substrate analogue., Lobsanov YD, Yoshida T, Desmet T, Nerinckx W, Yip P, Claeyssens M, Herscovics A, Howell PL, Acta Crystallogr D Biol Crystallogr. 2008 Mar;64(Pt 3):227-36. Epub 2008, Feb 20. PMID:18323617
Page seeded by OCA on Mon Mar 31 05:00:41 2008
Categories: Mannosyl-oligosaccharide 1,2-alpha-mannosidase | Penicillium citrinum | Single protein | Claeyssens, M. | Desmet, T. | Herscovics, A. | Howell, P L | Lobsanov, Y D. | Nerinckx, W. | Yip, P. | Yoshida, T. | Alternative conformation | Glycoprotein | Glycosidase | Hydrolase | Modulation of activity | Secreted
