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<p>[[:Category:Featured in Selected Pages|Other Selected Pages]]</p>
 
<p>[[Help:Contents#For_authors:_contributing_content|How to add content to Proteopedia]]</p>
<p>[[Help:Contents#For_authors:_contributing_content|How to add content to Proteopedia]]</p>
<p>[[Proteopedia:Video_Guide|Video Guides]]</p>
<p>[[Proteopedia:Video_Guide|Video Guides]]</p>
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<p>[[:Category:Featured in Art|Featured in Art]]</p>
 
<p>[[:Category:PDB Art|All Art on Science]]</p>
<p>[[:Category:PDB Art|All Art on Science]]</p>
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<p>[[:Category:Featured in I3DC|Featured in I3DC]]</p>
 
<p>[[How to get an Interactive 3D Complement for your paper]]</p>
<p>[[How to get an Interactive 3D Complement for your paper]]</p>
<p>[[Proteopedia:I3DC|List of Interactive Complements]]</p>
<p>[[Proteopedia:I3DC|List of Interactive Complements]]</p>
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<p>[[Teaching Strategies Using Proteopedia]]</p>
<p>[[Teaching Strategies Using Proteopedia]]</p>
<p>[[Teaching_Scenes%2C_Tutorials%2C_and_Educators%27_Pages|Examples of Pages for Teaching]]</p>
<p>[[Teaching_Scenes%2C_Tutorials%2C_and_Educators%27_Pages|Examples of Pages for Teaching]]</p>

Revision as of 07:09, 21 October 2018

ISSN 2310-6301

Because life has more than 2D, Proteopedia helps to understand relationships between structure and function. Proteopedia is a free, collaborative 3D-encyclopedia of proteins & other molecules.


Selected Pages Art on Science Journals Education
About this image
Green Fluorescent Protein

by Eran Hodis
Green fluorescent protein (GFP) is a bioluminescent polypeptide isolated from the jellyfish Aequorea victoria. GFP converts the blue chemiluminescence of aequorin into green fluorescent light. In the laboratory, GFP can be incorporated into a variety of biological systems in order to function as a marker protein. Since its discovery in 1962, GFP has become a significant contributor to the research of monitoring gene expression, localization, mobility, traffic, or interactions between various membrane and cytoplasmic proteins.

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About this image
Opening a Gate to Human Health

by Alice Clark (PDBe)
In the 1970s, an exciting discovery of a family of medicines was made by the Japanese scientist Satoshi Ōmura. One of these molecules, ivermectin, is shown in this artwork bound in the ligand binding pocket of the Farnesoid X receptor, a protein which helps regulate cholesterol in humans. This structure showed that ivermectin induced transcriptional activity of FXR and could be used to regulate metabolism.

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About this image
Interconversion of the specificities of human lysosomal enzymes associated with Fabry and Schindler diseases.

IB Tomasic, MC Metcalf, AI Guce, NE Clark, SC Garman. J. Biol. Chem. 2010 doi: 10.1074/jbc.M110.118588
The human lysosomal enzymes α-galactosidase and α-N-acetylgalactosaminidase share 46% amino acid sequence identity and have similar folds. Using a rational protein engineering approach, we interconverted the enzymatic specificity of α-GAL and α-NAGAL. The engineered α-GAL retains the antigenicity but has acquired the enzymatic specificity of α-NAGAL. Conversely, the engineered α-NAGAL retains the antigenicity but has acquired the enzymatic specificity of the α-GAL enzyme. Comparison of the crystal structures of the designed enzyme to the wild-type enzymes shows that active sites superimpose well, indicating success of the rational design. The designed enzymes might be useful as non-immunogenic alternatives in enzyme replacement therapy for treatment of lysosomal storage disorders such as Fabry disease.

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Tutorial: Ramachandran Plot Inspection

by Angel Herráez
Side-by-side display of dihedral angles in a 3D model of a tripeptide and its Ramachandran plot. Users can interact with any of them and the other will change accordingly. Includes animated rotations with display of clashes.

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How to add content to Proteopedia

Video Guides

Who knows ...

All Art on Science

How to get an Interactive 3D Complement for your paper

List of Interactive Complements

About Interactive 3D Complements

Teaching Strategies Using Proteopedia

Examples of Pages for Teaching

How to author pages and contribute to Proteopedia

About Image:Contact-email.png Table of Contents Structure Index Help

Proteopedia Page Contributors and Editors (what is this?)

Joel L. Sussman, Jaime Prilusky

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