2v8q
From Proteopedia
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|PDB= 2v8q |SIZE=350|CAPTION= <scene name='initialview01'>2v8q</scene>, resolution 2.10Å | |PDB= 2v8q |SIZE=350|CAPTION= <scene name='initialview01'>2v8q</scene>, resolution 2.10Å | ||
|SITE= <scene name='pdbsite=AC1:Amp+Binding+Site+For+Chain+E'>AC1</scene> | |SITE= <scene name='pdbsite=AC1:Amp+Binding+Site+For+Chain+E'>AC1</scene> | ||
| - | |LIGAND= <scene name='pdbligand=AMP:ADENOSINE MONOPHOSPHATE'>AMP</scene> | + | |LIGAND= <scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene> |
| - | |ACTIVITY= [http://en.wikipedia.org/wiki/Non-specific_serine/threonine_protein_kinase Non-specific serine/threonine protein kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.11.1 2.7.11.1] | + | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Non-specific_serine/threonine_protein_kinase Non-specific serine/threonine protein kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.11.1 2.7.11.1] </span> |
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY=[[2f15|2F15]] | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v8q OCA], [http://www.ebi.ac.uk/pdbsum/2v8q PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2v8q RCSB]</span> | ||
}} | }} | ||
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[[Category: Walker, P A.]] | [[Category: Walker, P A.]] | ||
[[Category: Xiao, B.]] | [[Category: Xiao, B.]] | ||
| - | [[Category: AMP]] | ||
[[Category: cbs domain]] | [[Category: cbs domain]] | ||
[[Category: kinase]] | [[Category: kinase]] | ||
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[[Category: transferase]] | [[Category: transferase]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:09:39 2008'' |
Revision as of 02:09, 31 March 2008
| |||||||
| , resolution 2.10Å | |||||||
|---|---|---|---|---|---|---|---|
| Sites: | |||||||
| Ligands: | |||||||
| Activity: | Non-specific serine/threonine protein kinase, with EC number 2.7.11.1 | ||||||
| Related: | 2F15
| ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
CRYSTAL STRUCTURE OF THE REGULATORY FRAGMENT OF MAMMALIAN AMPK IN COMPLEXES WITH AMP
Overview
AMP-activated protein kinase (AMPK) regulates cellular metabolism in response to the availability of energy and is therefore a target for type II diabetes treatment. It senses changes in the ratio of AMP/ATP by binding both species in a competitive manner. Thus, increases in the concentration of AMP activate AMPK resulting in the phosphorylation and differential regulation of a series of downstream targets that control anabolic and catabolic pathways. We report here the crystal structure of the regulatory fragment of mammalian AMPK in complexes with AMP and ATP. The phosphate groups of AMP/ATP lie in a groove on the surface of the gamma domain, which is lined with basic residues, many of which are associated with disease-causing mutations. Structural and solution studies reveal that two sites on the gamma domain bind either AMP or Mg.ATP, whereas a third site contains a tightly bound AMP that does not exchange. Our binding studies indicate that under physiological conditions AMPK mainly exists in its inactive form in complex with Mg.ATP, which is much more abundant than AMP. Our modelling studies suggest how changes in the concentration of AMP ([AMP]) enhance AMPK activity levels. The structure also suggests a mechanism for propagating AMP/ATP signalling whereby a phosphorylated residue from the alpha and/or beta subunits binds to the gamma subunit in the presence of AMP but not when ATP is bound.
About this Structure
2V8Q is a Protein complex structure of sequences from Homo sapiens and Rattus norvegicus. Full crystallographic information is available from OCA.
Reference
Structural basis for AMP binding to mammalian AMP-activated protein kinase., Xiao B, Heath R, Saiu P, Leiper FC, Leone P, Jing C, Walker PA, Haire L, Eccleston JF, Davis CT, Martin SR, Carling D, Gamblin SJ, Nature. 2007 Sep 27;449(7161):496-500. Epub 2007 Sep 12. PMID:17851531
Page seeded by OCA on Mon Mar 31 05:09:39 2008
Categories: Homo sapiens | Non-specific serine/threonine protein kinase | Protein complex | Rattus norvegicus | Carling, D. | Davis, C T. | Eccleston, J F. | Gamblin, S J. | Haire, L. | Heath, R. | Jing, C. | Leiper, F C. | Leone, P. | Martin, S R. | Saiu, P. | Walker, P A. | Xiao, B. | Cbs domain | Kinase | Magnesium | Nucleotide-binding | Phosphorylation | Serine/threonine-protein kinase | Transferase
