2vaz
From Proteopedia
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|PDB= 2vaz |SIZE=350|CAPTION= <scene name='initialview01'>2vaz</scene>, resolution 10.0Å | |PDB= 2vaz |SIZE=350|CAPTION= <scene name='initialview01'>2vaz</scene>, resolution 10.0Å | ||
|SITE= | |SITE= | ||
| - | |LIGAND= | + | |LIGAND= <scene name='pdbligand=A:ADENOSINE-5'-MONOPHOSPHATE'>A</scene>, <scene name='pdbligand=C:CYTIDINE-5'-MONOPHOSPHATE'>C</scene>, <scene name='pdbligand=G:GUANOSINE-5'-MONOPHOSPHATE'>G</scene>, <scene name='pdbligand=U:URIDINE-5'-MONOPHOSPHATE'>U</scene> |
|ACTIVITY= | |ACTIVITY= | ||
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY=[[1p6g|1P6G]], [[1p87|1P87]], [[2avy|2AVY]], [[2aw7|2AW7]] | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vaz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vaz OCA], [http://www.ebi.ac.uk/pdbsum/2vaz PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2vaz RCSB]</span> | ||
}} | }} | ||
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[[Category: translation initiation]] | [[Category: translation initiation]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:10:31 2008'' |
Revision as of 02:10, 31 March 2008
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| , resolution 10.0Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | , , , | ||||||
| Related: | 1P6G, 1P87, 2AVY, 2AW7
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| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
MODEL OF THE S15-MRNA COMPLEX FITTED INTO THE CRYO-EM MAP OF THE 70S ENTRAPMENT COMPLEX.
Overview
Gene expression can be regulated at the level of initiation of protein biosynthesis via structural elements present at the 5' untranslated region of mRNAs. These folded mRNA segments may bind to the ribosome, thus blocking translation until the mRNA unfolds. Here, we report a series of cryo-electron microscopy snapshots of ribosomal complexes directly visualizing either the mRNA structure blocked by repressor protein S15 or the unfolded, active mRNA. In the stalled state, the folded mRNA prevents the start codon from reaching the peptidyl-tRNA (P) site inside the ribosome. Upon repressor release, the mRNA unfolds and moves into the mRNA channel allowing translation initiation. A comparative structure and sequence analysis suggests the existence of a universal stand-by site on the ribosome (the 30S platform) dedicated for binding regulatory 5' mRNA elements. Different types of mRNA structures may be accommodated during translation preinitiation and regulate gene expression by transiently stalling the ribosome.
About this Structure
2VAZ is a Protein complex structure of sequences from Escherichia coli. Full crystallographic information is available from OCA.
Reference
Structured mRNAs regulate translation initiation by binding to the platform of the ribosome., Marzi S, Myasnikov AG, Serganov A, Ehresmann C, Romby P, Yusupov M, Klaholz BP, Cell. 2007 Sep 21;130(6):1019-31. PMID:17889647
Page seeded by OCA on Mon Mar 31 05:10:31 2008
Categories: Escherichia coli | Protein complex | Ehresmann, C. | Klaholz, B P. | Marzi, S. | Myasnikov, A G. | Romby, P. | Serganov, A. | Yusupov, M. | Gene expression regulation | Mrna structure | Platform-binding center | Protein synthesis | Repressor protein | Ribonucleoprotein | Ribosomal protein | Ribosome | Riboswitch | Rna pseudoknot | Rna-binding | Rrna-binding | Translation initiation
