2vcg
From Proteopedia
(Difference between revisions)
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|PDB= 2vcg |SIZE=350|CAPTION= <scene name='initialview01'>2vcg</scene>, resolution 1.90Å | |PDB= 2vcg |SIZE=350|CAPTION= <scene name='initialview01'>2vcg</scene>, resolution 1.90Å | ||
|SITE= <scene name='pdbsite=AC1:Gol+Binding+Site+For+Chain+D'>AC1</scene>, <scene name='pdbsite=AC2:Gol+Binding+Site+For+Chain+C'>AC2</scene>, <scene name='pdbsite=AC3:Zn+Binding+Site+For+Chain+A'>AC3</scene>, <scene name='pdbsite=AC4:Zn+Binding+Site+For+Chain+B'>AC4</scene>, <scene name='pdbsite=AC5:Zn+Binding+Site+For+Chain+C'>AC5</scene>, <scene name='pdbsite=AC6:Zn+Binding+Site+For+Chain+D'>AC6</scene>, <scene name='pdbsite=AC7:Zn+Binding+Site+For+Chain+D'>AC7</scene>, <scene name='pdbsite=AC8:K+Binding+Site+For+Chain+A'>AC8</scene>, <scene name='pdbsite=AC9:K+Binding+Site+For+Chain+B'>AC9</scene>, <scene name='pdbsite=BC1:K+Binding+Site+For+Chain+C'>BC1</scene>, <scene name='pdbsite=BC2:K+Binding+Site+For+Chain+D'>BC2</scene>, <scene name='pdbsite=BC3:K+Binding+Site+For+Chain+A'>BC3</scene>, <scene name='pdbsite=BC4:K+Binding+Site+For+Chain+B'>BC4</scene>, <scene name='pdbsite=BC5:K+Binding+Site+For+Chain+C'>BC5</scene>, <scene name='pdbsite=BC6:K+Binding+Site+For+Chain+D'>BC6</scene>, <scene name='pdbsite=BC7:S17+Binding+Site+For+Chain+D'>BC7</scene>, <scene name='pdbsite=BC8:S17+Binding+Site+For+Chain+C'>BC8</scene>, <scene name='pdbsite=BC9:S17+Binding+Site+For+Chain+A'>BC9</scene>, <scene name='pdbsite=CC1:S17+Binding+Site+For+Chain+B'>CC1</scene> and <scene name='pdbsite=CC2:Cl+Binding+Site+For+Chain+D'>CC2</scene> | |SITE= <scene name='pdbsite=AC1:Gol+Binding+Site+For+Chain+D'>AC1</scene>, <scene name='pdbsite=AC2:Gol+Binding+Site+For+Chain+C'>AC2</scene>, <scene name='pdbsite=AC3:Zn+Binding+Site+For+Chain+A'>AC3</scene>, <scene name='pdbsite=AC4:Zn+Binding+Site+For+Chain+B'>AC4</scene>, <scene name='pdbsite=AC5:Zn+Binding+Site+For+Chain+C'>AC5</scene>, <scene name='pdbsite=AC6:Zn+Binding+Site+For+Chain+D'>AC6</scene>, <scene name='pdbsite=AC7:Zn+Binding+Site+For+Chain+D'>AC7</scene>, <scene name='pdbsite=AC8:K+Binding+Site+For+Chain+A'>AC8</scene>, <scene name='pdbsite=AC9:K+Binding+Site+For+Chain+B'>AC9</scene>, <scene name='pdbsite=BC1:K+Binding+Site+For+Chain+C'>BC1</scene>, <scene name='pdbsite=BC2:K+Binding+Site+For+Chain+D'>BC2</scene>, <scene name='pdbsite=BC3:K+Binding+Site+For+Chain+A'>BC3</scene>, <scene name='pdbsite=BC4:K+Binding+Site+For+Chain+B'>BC4</scene>, <scene name='pdbsite=BC5:K+Binding+Site+For+Chain+C'>BC5</scene>, <scene name='pdbsite=BC6:K+Binding+Site+For+Chain+D'>BC6</scene>, <scene name='pdbsite=BC7:S17+Binding+Site+For+Chain+D'>BC7</scene>, <scene name='pdbsite=BC8:S17+Binding+Site+For+Chain+C'>BC8</scene>, <scene name='pdbsite=BC9:S17+Binding+Site+For+Chain+A'>BC9</scene>, <scene name='pdbsite=CC1:S17+Binding+Site+For+Chain+B'>CC1</scene> and <scene name='pdbsite=CC2:Cl+Binding+Site+For+Chain+D'>CC2</scene> | ||
| - | |LIGAND= <scene name='pdbligand= | + | |LIGAND= <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=S17:METHYL+4-BROMO-N-[8-(HYDROXYAMINO)-8-OXOOCTANOYL]-L-PHENYLALANINATE'>S17</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene> |
|ACTIVITY= | |ACTIVITY= | ||
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY=[[1zz1|1ZZ1]], [[1zz0|1ZZ0]], [[1zz3|1ZZ3]] | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vcg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vcg OCA], [http://www.ebi.ac.uk/pdbsum/2vcg PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2vcg RCSB]</span> | ||
}} | }} | ||
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[[Category: Ficner, R.]] | [[Category: Ficner, R.]] | ||
[[Category: Strasser, A.]] | [[Category: Strasser, A.]] | ||
| - | [[Category: CL]] | ||
| - | [[Category: GOL]] | ||
| - | [[Category: K]] | ||
| - | [[Category: S17]] | ||
| - | [[Category: ZN]] | ||
[[Category: hdac-like amidohydrolase]] | [[Category: hdac-like amidohydrolase]] | ||
[[Category: hdah]] | [[Category: hdah]] | ||
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[[Category: inhibitor]] | [[Category: inhibitor]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:10:56 2008'' |
Revision as of 02:11, 31 March 2008
| |||||||
| , resolution 1.90Å | |||||||
|---|---|---|---|---|---|---|---|
| Sites: | , , , , , , , , , , , , , , , , , , and | ||||||
| Ligands: | , , , , | ||||||
| Related: | 1ZZ1, 1ZZ0, 1ZZ3
| ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
CRYSTAL STRUCTURE OF A HDAC-LIKE PROTEIN HDAH FROM BORDETELLA SP. WITH THE BOUND INHIBITOR ST-17
Overview
We synthesized biarylalanine-containing hydroxamic acids and tested them on immunoprecipitated HDAC1 and HDAC6 and show a subtype selectivity for HDAC6 that was confirmed in cells by Western blot (tubulin vs histones). We obtained an X-ray structure with a HDAC6-selective inhibitor with the bacterial deacetylase HDAH. Docking studies were carried out using HDAC1 and HDAC6 protein models. Antiproliferative activity was shown on cancer cells for selected compounds.
About this Structure
2VCG is a Single protein structure of sequence from Alcaligenes sp.. Full crystallographic information is available from OCA.
Reference
Phenylalanine-containing hydroxamic acids as selective inhibitors of class IIb histone deacetylases (HDACs)., Schafer S, Saunders L, Eliseeva E, Velena A, Jung M, Schwienhorst A, Strasser A, Dickmanns A, Ficner R, Schlimme S, Sippl W, Verdin E, Jung M, Bioorg Med Chem. 2008 Feb 15;16(4):2011-33. Epub 2007 Nov 4. PMID:18054239
Page seeded by OCA on Mon Mar 31 05:10:56 2008
