We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.
Sandbox Reserved 1474
From Proteopedia
(Difference between revisions)
| Line 6: | Line 6: | ||
|LIGAND= <scene name='pdbligand=1WE:(2S)-1-PHENYLPROPAN-2-AMINE'>AMP</scene>, | |LIGAND= <scene name='pdbligand=1WE:(2S)-1-PHENYLPROPAN-2-AMINE'>AMP</scene>, | ||
|ACTIVITY= <span class='plainlinks'>, </span> | |ACTIVITY= <span class='plainlinks'>, </span> | ||
| - | |GENE= | + | |GENE= IgG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice]) |
|RELATEDENTRY=[[3gkz|3gkz]], [[4laq|4laq]], [[4las|4las]] | |RELATEDENTRY=[[3gkz|3gkz]], [[4laq|4laq]], [[4las|4las]] | ||
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4lar FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4lar OCA], [http://pdbe.org/4lar PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4lar RCSB], [http://www.ebi.ac.uk/pdbsum/4lar PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4lar ProSAT]</span> | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4lar FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4lar OCA], [http://pdbe.org/4lar PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4lar RCSB], [http://www.ebi.ac.uk/pdbsum/4lar PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4lar ProSAT]</span> | ||
Revision as of 08:05, 7 December 2018
Contents |
Introduction
==================================
| |||||||||
| Crystal structures of a therapeutic single chain antibody in complex with amphetamine, resolution 2.38Å () | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Ligands: | , | ||||||||
| Gene: | IgG (LK3 transgenic mice) | ||||||||
| Activity: | , | ||||||||
| Related: | 3gkz, 4laq, 4las | ||||||||
| |||||||||
| Resources: | FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT | ||||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||||
==================================
|
, , , ,
|
Scene 3GKZ hydrophobic interaction between ligand and residues on LDRs Scene 3GKZ cationic Nitrogen with residual hydrogen bonds Scene 3GKZ solevent hydrogen bonds stabilizing the binding
Scene 4LAR Scene 4LAS
You may include any references to papers as in: the use of JSmol in Proteopedia [1] or to the article describing Jmol [2] to the rescue.
Function
Disease
Relevance
Structural highlights
This is a sample scene created with SAT to by Group, and another to make of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.
</StructureSection>
References
- ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
- ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
