5t65

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(Difference between revisions)

Revision as of 07:05, 12 December 2018

LIGAND BINDING DOMAIN OF PSEUDOMONAS AERUGINOSA PAO1 AMINO ACID CHEMORECEPTOR PCTA IN COMPLEX WITH L-ILE

Structural highlights

5t65 is a 2 chain structure with sequence from Pseae. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:	, ,
Related:	3c8c
Gene:	pctA, PA4309 (PSEAE)
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[PCTA_PSEAE] Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of methylation. Major receptor that responds to all naturally occurring L-amino acids, except L-Gln and L-Asp. Also involved in repellent responses to trichloroethylene (TCE), chloroform and methylthiocyanate.^[1] ^[2] ^[3] ^[4]

Publication Abstract from PubMed

Pseudomonas aeruginosa is an opportunistic pathogen and one of the major model organisms for the study of chemotaxis. The bacterium harbours 26 genes encoding chemoreceptors, most of which have not been annotated with a function. The paralogous chemoreceptors PctA and PctB (Pseudomonas chemotactic transducer A and B) were found to mediate chemotaxis towards L-amino acids. However, the ligand spectrum of the receptors is quite different since the recombinant ligand-binding region (LBR) of PctA binds 17 different L-amino acids whereas that of PctB recognizes only five. To determine the molecular basis underlying this ligand specificity, PctA-LBR and PctB-LBR have been purified and crystals have been produced after pre-incubation with L-Ile and L-Arg, respectively. Initial crystallization conditions have been identified by the counter-diffusion method and X-ray data have been collected at 2.5 A (PctA-LBR bound to L-Ile) and 3.14 A (PctB-LBR bound to L-Arg) resolution. Crystals belonged to space groups P2(1)2(1)2(1) and P3(1)2(1), with unit-cell parameters a = 72.2, b = 78.5, c = 116.6 A and a = b = 111.6, c = 117.4, respectively, for PctA-LBR and PctB-LBR. Molecular-replacement methods will be pursued for structural determination.

Purification, crystallization and preliminary crystallographic analysis of the ligand-binding regions of the PctA and PctB chemoreceptors from Pseudomonas aeruginosa in complex with amino acids.,Rico-Jimenez M, Munoz-Martinez F, Krell T, Gavira JA, Pineda-Molina E Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Dec;69(Pt 12):1431-5. doi:, 10.1107/S1744309113023592. Epub 2013 Nov 29. PMID:24316847^[5]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Shitashiro M, Tanaka H, Hong CS, Kuroda A, Takiguchi N, Ohtake H, Kato J. Identification of chemosensory proteins for trichloroethylene in Pseudomonas aeruginosa. J Biosci Bioeng. 2005 Apr;99(4):396-402. PMID:16233808 doi:http://dx.doi.org/10.1263/jbb.99.396
↑ Rico-Jimenez M, Munoz-Martinez F, Garcia-Fontana C, Fernandez M, Morel B, Ortega A, Ramos JL, Krell T. Paralogous chemoreceptors mediate chemotaxis towards protein amino acids and the non-protein amino acid gamma-aminobutyrate (GABA). Mol Microbiol. 2013 Jun;88(6):1230-43. doi: 10.1111/mmi.12255. Epub 2013 May 22. PMID:23650915 doi:http://dx.doi.org/10.1111/mmi.12255
↑ Kuroda A, Kumano T, Taguchi K, Nikata T, Kato J, Ohtake H. Molecular cloning and characterization of a chemotactic transducer gene in Pseudomonas aeruginosa. J Bacteriol. 1995 Dec;177(24):7019-25. PMID:8522505
↑ Taguchi K, Fukutomi H, Kuroda A, Kato J, Ohtake H. Genetic identification of chemotactic transducers for amino acids in Pseudomonas aeruginosa. Microbiology. 1997 Oct;143 ( Pt 10):3223-9. PMID:9353923 doi:http://dx.doi.org/10.1099/00221287-143-10-3223
↑ Rico-Jimenez M, Munoz-Martinez F, Krell T, Gavira JA, Pineda-Molina E. Purification, crystallization and preliminary crystallographic analysis of the ligand-binding regions of the PctA and PctB chemoreceptors from Pseudomonas aeruginosa in complex with amino acids. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Dec;69(Pt 12):1431-5. doi:, 10.1107/S1744309113023592. Epub 2013 Nov 29. PMID:24316847 doi:http://dx.doi.org/10.1107/S1744309113023592

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 See Also
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5t65"

@@ Line 1: / Line 1: @@
-==LIGAND BINDING DOMAIN OF PSEUDOMONAS AERUGINOSA PAO1 AMINO ACID CHEMORECPETORS PCTA IN COMPLEX WITH L-ILE==
+==LIGAND BINDING DOMAIN OF PSEUDOMONAS AERUGINOSA PAO1 AMINO ACID CHEMORECEPTOR PCTA IN COMPLEX WITH L-ILE==
 <StructureSection load='5t65' size='340' side='right' caption='[[5t65]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5t65]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5T65 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5T65 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5t65]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseae Pseae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5T65 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5T65 FirstGlance]. <br>
 </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=ILE:ISOLEUCINE'>ILE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
 <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3c8c|3c8c]]</td></tr>
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pctA, PA4309 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=208964 PSEAE])</td></tr>
 <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5t65 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5t65 OCA], [http://pdbe.org/5t65 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5t65 RCSB], [http://www.ebi.ac.uk/pdbsum/5t65 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5t65 ProSAT]</span></td></tr>
 </table>
@@ Line 19: / Line 20: @@
 </div>
 <div class="pdbe-citations 5t65" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Chemotaxis protein|Chemotaxis protein]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
+[[Category: Pseae]]
+[[Category: Conejero-Muriel, M]]
 [[Category: Gavira, J A]]
-[[Category: Gimenez-Rico, M]]
 [[Category: Krell, T]]
-[[Category: Pineda-Molina, E]]
+[[Category: Ortega, A]]
+[[Category: Rico-Jimenez, M]]
+[[Category: Zhulin, I]]
 [[Category: Chemotactic transducer]]
 [[Category: Ligand binding domain]]
 [[Category: Pseudomonas aeruginosa]]
 [[Category: Signaling protein]]

5t65

From Proteopedia

Revision as of 07:05, 12 December 2018

LIGAND BINDING DOMAIN OF PSEUDOMONAS AERUGINOSA PAO1 AMINO ACID CHEMORECEPTOR PCTA IN COMPLEX WITH L-ILE

Structural highlights

Function

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

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