5zbd

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'''Unreleased structure'''
 
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The entry 5zbd is ON HOLD until Feb 11 2020
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==Crystal structure of tryptophan oxidase (C395A mutant) from Chromobacterium violaceum==
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<StructureSection load='5zbd' size='340' side='right' caption='[[5zbd]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5zbd]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZBD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ZBD FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=TRP:TRYPTOPHAN'>TRP</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/7-chloro-L-tryptophan_oxidase 7-chloro-L-tryptophan oxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.3.23 1.4.3.23] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5zbd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zbd OCA], [http://pdbe.org/5zbd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5zbd RCSB], [http://www.ebi.ac.uk/pdbsum/5zbd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5zbd ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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l-Tryptophan oxidase, VioA from Chromobacterium violaceum, which has a high substrate specificity for tryptophan, is useful for quantitative assay of tryptophan. However, stability of wild type VioA is not enough for its application in clinical or industrial use. To improve the thermal stability of the enzyme, we developed a VioA (C395A) mutant, with higher stability than wild type VioA. The VioA (C395A) exhibited similar specificity and kinetic parameter for tryptophan to wild type. Conventionally, the quantity of tryptophan is determined by instrumental methods, such as high-performance liquid chromatography (HPLC) after pre-column-derivatization. Using the mutant enzyme, we succeeded in the tryptophan quantification in human plasma samples, to an accuracy of &lt;2.9% when compared to the instrumental method, and to a precision of CV &lt;3.2%. To analyse the improvement in storage stability and substrate specificity, we further determined the crystal structures of VioA (C395A) complexed with FAD, and with FAD and tryptophan at 1.8 A resolution.
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Authors: Yamaguchi, H., Tatsumi, M., Takahashi, K., Tagami, U., Sugiki, M., Kashiwagi, T., Okazaki, S., Mizukoshi, T., Asano, Y.
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Protein engineering for improving the thermostability of tryptophan oxidase and insights from structural analysis.,Yamaguchi H, Tatsumi M, Takahashi K, Tagami U, Sugiki M, Kashiwagi T, Kameya M, Okazaki S, Mizukoshi T, Asano Y J Biochem. 2018 Nov 1;164(5):359-367. doi: 10.1093/jb/mvy065. PMID:30053101<ref>PMID:30053101</ref>
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Description: Crystal structure of tryptophan oxidase (C395A mutant) from Chromobacterium violaceum
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Yamaguchi, H]]
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<div class="pdbe-citations 5zbd" style="background-color:#fffaf0;"></div>
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[[Category: Mizukoshi, T]]
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== References ==
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[[Category: Takahashi, K]]
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<references/>
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__TOC__
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</StructureSection>
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[[Category: 7-chloro-L-tryptophan oxidase]]
[[Category: Asano, Y]]
[[Category: Asano, Y]]
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[[Category: Kashiwagi, T]]
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[[Category: Mizukoshi, T]]
[[Category: Okazaki, S]]
[[Category: Okazaki, S]]
[[Category: Sugiki, M]]
[[Category: Sugiki, M]]
[[Category: Tagami, U]]
[[Category: Tagami, U]]
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[[Category: Takahashi, K]]
[[Category: Tatsumi, M]]
[[Category: Tatsumi, M]]
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[[Category: Kashiwagi, T]]
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[[Category: Yamaguchi, H]]
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[[Category: Oxidase]]
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[[Category: Oxidoreductase]]

Revision as of 08:11, 19 December 2018

Crystal structure of tryptophan oxidase (C395A mutant) from Chromobacterium violaceum

5zbd, resolution 1.80Å

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