6idp

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m (Protected "6idp" [edit=sysop:move=sysop])
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'''Unreleased structure'''
 
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The entry 6idp is ON HOLD
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==Crystal structure of Vibrio cholerae MATE transporter VcmN in the straight form==
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<StructureSection load='6idp' size='340' side='right' caption='[[6idp]], [[Resolution|resolution]] 2.21&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6idp]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IDP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6IDP FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=OLC:(2R)-2,3-DIHYDROXYPROPYL+(9Z)-OCTADEC-9-ENOATE'>OLC</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6idp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6idp OCA], [http://pdbe.org/6idp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6idp RCSB], [http://www.ebi.ac.uk/pdbsum/6idp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6idp ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Multidrug and toxic compound extrusion (MATE) transporters efflux toxic compounds using a Na(+) or H(+) gradient across the membrane. Although the structures of MATE transporters have been reported, the cation-coupled substrate transport mechanism remains controversial. Here we report crystal structures of VcmN, a Vibrio cholerae MATE transporter driven by the H(+) gradient. High-resolution structures in two distinct conformations associated with different pHs revealed that the rearrangement of the hydrogen-bonding network around the conserved Asp35 induces the bending of transmembrane helix 1, as in the case of the H(+)-coupled Pyrococcus furiosus MATE transporter. We also determined the crystal structure of the D35N mutant, which captured a unique conformation of TM1 facilitated by an altered hydrogen-bonding network. Based on the present results, we propose a common step in the transport cycle shared among prokaryotic H(+)-coupled MATE transporters.
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Authors:
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Structural Basis of H(+)-Dependent Conformational Change in a Bacterial MATE Transporter.,Kusakizako T, Claxton DP, Tanaka Y, Maturana AD, Kuroda T, Ishitani R, Mchaourab HS, Nureki O Structure. 2018 Oct 30. pii: S0969-2126(18)30365-4. doi:, 10.1016/j.str.2018.10.004. PMID:30449688<ref>PMID:30449688</ref>
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Description:
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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<div class="pdbe-citations 6idp" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Claxton, D P]]
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[[Category: Ishitani, R]]
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[[Category: Kuroda, T]]
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[[Category: Kusakizako, T]]
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[[Category: Maturana, A D]]
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[[Category: Mchaourab, H S]]
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[[Category: Nureki, O]]
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[[Category: Tanaka, Y]]
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[[Category: Mate multidrug transporter]]
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[[Category: Transport protein]]

Revision as of 12:11, 16 January 2019

Crystal structure of Vibrio cholerae MATE transporter VcmN in the straight form

6idp, resolution 2.21Å

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