This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Pseudouridine synthase

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
((pseudo)uridine is a nucleoside, not nucleotide; other improvements in redaction)
Line 9: Line 9:
The conversion of uridine to pseudouridine is accompanied by a conformational change of pseudouridine synthase<ref>PMID:14990747</ref>. <scene name='46/465439/Cv/3'>tRNA pseudouridine synthase binding with pseudouridine monophosphate</scene> ([[1ze2]]).
The conversion of uridine to pseudouridine is accompanied by a conformational change of pseudouridine synthase<ref>PMID:14990747</ref>. <scene name='46/465439/Cv/3'>tRNA pseudouridine synthase binding with pseudouridine monophosphate</scene> ([[1ze2]]).
</StructureSection>
</StructureSection>
 +
 +
== 3D Structures of deaminase ==
 +
 +
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
 +
{{#tree:id=OrganizedByTopic|openlevels=0|
 +
 +
* Pseudouridine synthase
 +
 +
**[[1dj0]] – EcPUS I – Escherichia coli<br />
 +
**[[1ze1]] – TmPUS B – Thermotoga maritima<br />
 +
**[[1ksk]], [[1ksl]] – EcPUS RsuA <br />
 +
**[[1vio]] - PUS RsuA – Haemophilus influenzae<br />
 +
**[[1xpi]] - EcPUS RluC catalytic domain<br />
 +
**[[1v9k]] - EcPUS RluC C-terminal domain (mutant) <br />
 +
**[[2ist]] - EcPUS RluD <br />
 +
**[[1prz]], [[1qyu]], [[1v9f]] - EcPUS RluD catalytic domain<br />
 +
**[[2olw]] - EcPUS RluE<br />
 +
**[[2oml]] - EcPUS RluE catalytic domain<br />
 +
**[[2gml]] - EcPUS RluF catalytic domain<br />
 +
**[[4iqm]], [[4its]], [[4j37]], [[4nz6]] - hPUS Pus1 catalytic domain - human<br />
 +
**[[4nz7]] - hPUS Pus1 catalytic domain (mutant)<br />
 +
**[[1vs3]] – PUS TruA – Thermus thermophilus<br />
 +
**[[1sgv]] – PUS TruB – Mycobacterium tuberculosis<br />
 +
**[[1si7]], [[1szw]], [[1sb7]] - EcPUS TruD<br />
 +
 +
* Pseudouridine synthase complex with RNA
 +
 +
**[[1k8w]] – EcPUS B + stem-loop RNA <br />
 +
**[[1zl3]] - EcPUS B (mutant) + stem-loop RNA<br />
 +
**[[2i82]] – EcPUS RluA + RNA<br />
 +
**[[3dh3]] - EcPUS RluF + RNA<br />
 +
**[[2nqp]], [[2nr0]], [[2nre]] – EcPUS TruA + Leu-tRNA<br />
 +
**[[3hjw]], [[3lwo]], [[3lwp]], [[3lwq]], [[3lwr]], [[3lwv]] – PfPUS Cbf5 + ribosome biogenesis protein Nop10 + ribosomal protein L7 + RNA – Pyrococcus furiosus<br />
 +
**[[3mqk]] - PfPUS Cbf5 + ribosome biogenesis protein Nop10 + small nuclear RNP Gar1-like protein + RNA<br />
 +
**[[3hjy]] - PfPUS Cbf5 + ribosome biogenesis protein NOP10 + RNA<br />
 +
**[[1ze2]] - TmPUS B + RNA<br />
 +
**[[2ab4]] - TmPUS B (mutant) + RNA<br />
 +
**[[1r3e]], [[1r3f]] - EcPUS B + RNA<br />
 +
 +
* Probable pseudouridine synthase
 +
 +
**[[2apo]] – PPUS + ribosome biogenesis protein Nop10 – Methanocaldococcus jannaschii<br />
 +
**[[2ey4]] - PfPPUS Cbf5 + ribosome biogenesis protein Nop10 + small nucleolar RNP <br />
 +
**[[2hvy]], [[3hax]] - PfPPUS B + ribosome biogenesis protein Nop10 + ribosomal protein L7 + RNA<br />
 +
**[[2rfk]] - PfPUS B + ribosome biogenesis protein Nop10 + small nucleolar RNP + RNA<br />
 +
**[[3hay]] - PfPPUS B + ribosome biogenesis protein Nop10 + ribosomal protein L7 + small nucleolar RNP + RNA<br />
 +
**[[2aus]] – PPUS B + ribosome biogenesis protein Nop10 – Pyrococcus abyssi
 +
**[[1z2z]] – PPUS D – Methanosarcina mazei<br />
 +
}}

Revision as of 09:43, 5 February 2019

tRNA pseudouridine synthase complex with RNA that contains pseudouridine monophosphate 1ze2

Drag the structure with the mouse to rotate

3D Structures of deaminase

Updated on 05-February-2019

Retrieved from "http://52.214.119.220/wiki/index.php/Pseudouridine_synthase"
Personal tools