User:Jaime Prilusky/Test/Viewer
From Proteopedia
(Difference between revisions)
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The addition of the ''viewer'' parameter to ''<StructureSection'' allows to choose between alternative engines for rendering a structure. Current valid values are '''jmol''' <ref>Jmol: an open-source browser-based HTML5 viewer and stand-alone Java viewer for chemical structures in 3D [http://jmol.org] </ref> (default) and '''molstar''' <ref>Mol* (/'molstar/) is an open collaboration started by PDBe and RCSB PDB to provide a technology stack for data delivery and analysis tools of macromolecules [https://molstar.org/]</ref>. | The addition of the ''viewer'' parameter to ''<StructureSection'' allows to choose between alternative engines for rendering a structure. Current valid values are '''jmol''' <ref>Jmol: an open-source browser-based HTML5 viewer and stand-alone Java viewer for chemical structures in 3D [http://jmol.org] </ref> (default) and '''molstar''' <ref>Mol* (/'molstar/) is an open collaboration started by PDBe and RCSB PDB to provide a technology stack for data delivery and analysis tools of macromolecules [https://molstar.org/]</ref>. | ||
==Under development== | ==Under development== | ||
| - | A few features need additional development to work under different viewers, like <scene> and SAT. | + | A few features need additional development to work under different viewers, like <scene> and SAT. Example are these links to <scene name="/12/3456/Sample/1">color</scene> by Group, and to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. |
==Help on the tools== | ==Help on the tools== | ||
The cheatsheet for using LiteMol viewer, available at [[http://www.ebi.ac.uk/pdbe/litemol PDBe]], should be Ok for the MolStar viewer in use. | The cheatsheet for using LiteMol viewer, available at [[http://www.ebi.ac.uk/pdbe/litemol PDBe]], should be Ok for the MolStar viewer in use. | ||
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There was nothing so very remarkable in that; nor did Alice think it so very much out of the way to hear the Rabbit say to itself, `Oh dear! Oh dear! I shall be late!' (when she thought it over afterwards, it occurred to her that she ought to have wondered at this, but at the time it all seemed quite natural); but when the Rabbit actually took a watch out of its waistcoat-pocket, and looked at it, and then hurried on, Alice started to her feet, for it flashed across her mind that she had never before seen a rabbit with either a waistcoat-pocket, or a watch to take out of it, and burning with curiosity, she ran across the field after it, and fortunately was just in time to see it pop down a large rabbit-hole under the hedge. <ref>Down the Rabbit-Hole. Alice's Adventures in Wonderland, by Lewis Carroll</ref>. | There was nothing so very remarkable in that; nor did Alice think it so very much out of the way to hear the Rabbit say to itself, `Oh dear! Oh dear! I shall be late!' (when she thought it over afterwards, it occurred to her that she ought to have wondered at this, but at the time it all seemed quite natural); but when the Rabbit actually took a watch out of its waistcoat-pocket, and looked at it, and then hurried on, Alice started to her feet, for it flashed across her mind that she had never before seen a rabbit with either a waistcoat-pocket, or a watch to take out of it, and burning with curiosity, she ran across the field after it, and fortunately was just in time to see it pop down a large rabbit-hole under the hedge. <ref>Down the Rabbit-Hole. Alice's Adventures in Wonderland, by Lewis Carroll</ref>. | ||
| - | |||
| - | Links to <scene name="/12/3456/Sample/1">color</scene> by Group, and to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. | ||
</SX> | </SX> | ||
<references/> | <references/> | ||
Revision as of 07:50, 23 February 2019
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- ↑ Jmol: an open-source browser-based HTML5 viewer and stand-alone Java viewer for chemical structures in 3D [1]
- ↑ Mol* (/'molstar/) is an open collaboration started by PDBe and RCSB PDB to provide a technology stack for data delivery and analysis tools of macromolecules [2]
- ↑ Down the Rabbit-Hole. Alice's Adventures in Wonderland, by Lewis Carroll
