5z6h

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 5z6h is ON HOLD until Paper Publication
+
==Structure of periplasmic trehalase from Diamondback moth gut bacteria in the apo form==
 +
<StructureSection load='5z6h' size='340' side='right' caption='[[5z6h]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[5z6h]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"aerobacter_cloacae"_(jordan_1890)_bergey_et_al._1923 "aerobacter cloacae" (jordan 1890) bergey et al. 1923]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Z6H OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5Z6H FirstGlance]. <br>
 +
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
 +
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5z66|5z66]]</td></tr>
 +
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">treA, SAMEA2273171_02252 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=550 "Aerobacter cloacae" (Jordan 1890) Bergey et al. 1923])</td></tr>
 +
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Alpha,alpha-trehalase Alpha,alpha-trehalase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.28 3.2.1.28] </span></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5z6h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5z6h OCA], [http://pdbe.org/5z6h PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5z6h RCSB], [http://www.ebi.ac.uk/pdbsum/5z6h PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5z6h ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[[http://www.uniprot.org/uniprot/A0A156C5X3_ENTCL A0A156C5X3_ENTCL]] Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system.[HAMAP-Rule:MF_01060]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Energy metabolism in the diamondback moth Plutella xylostella is facilitated by trehalase, an enzyme which assists in trehalose hydrolysis, from the predominant gut bacterium Enterobacter cloacae. We report the biochemical and structural characterization of recombinant trehalase from E. cloacae (Px_EclTre). Px_EclTre showed KM of 1.47 (+/-0.05) mm, kcat of 6254.72 min(-1) and Vmax 0.2 (+/-0.002) mm.min(-1) at 55 degrees C and acidic pH. Crystal structures of Px_EclTre were determined in the ligand-free form and bound to the inhibitor Validoxylamine A. The crystal structure of the ligand-free form, unavailable until now for any other bacterial trehalases, enabled us to delineate the conformational changes accompanying ligand binding in trehalases. Multiple salt bridges were identified that potentially facilitated closure of a hood over the substrate-binding site. A cluster of five tryptophans lined the -1 substrate-binding subsite, interacted with crucial active site residues and contributed to both trehalase activity and stability. The importance of these residues in enzyme activity was further validated by mutagenesis studies. Many of these identified residues form part of signature motifs and other conserved sequences in trehalases. The structure analysis thus led to the assignment of the functional role to these conserved residues. This information can be further explored for the design of effective inhibitors against trehalases.
-
Authors: Harne, S.R., Adhav, A.S., Joshi, R.S., Gayathri, P.
+
Mechanistic insights into enzymatic catalysis by trehalase from the insect gut endosymbiont Enterobacter cloacae.,Adhav A, Harne S, Bhide A, Giri A, Gayathri P, Joshi R FEBS J. 2019 Jan 18. doi: 10.1111/febs.14760. PMID:30657252<ref>PMID:30657252</ref>
-
Description: Structure of periplasmic trehalase from Diamondback moth gut bacteria in the apo form
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Harne, S.R]]
+
<div class="pdbe-citations 5z6h" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Alpha,alpha-trehalase]]
 +
[[Category: Adhav, A S]]
[[Category: Gayathri, P]]
[[Category: Gayathri, P]]
-
[[Category: Adhav, A.S]]
+
[[Category: Harne, S R]]
-
[[Category: Joshi, R.S]]
+
[[Category: Joshi, R S]]
 +
[[Category: Apo structure]]
 +
[[Category: Hydrolase]]
 +
[[Category: Trehalase from insect gut bacterium]]

Revision as of 15:52, 27 February 2019

Structure of periplasmic trehalase from Diamondback moth gut bacteria in the apo form

5z6h, resolution 2.30Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools