4b93

From Proteopedia

(Difference between revisions)

Revision as of 13:59, 13 March 2019

Complex of Vamp7 cytoplasmic domain with 2nd ankyrin repeat domain of Varp

Structural highlights

4b93 is a 2 chain structure with sequence from Human and Lk3 transgenic mice. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Related:	2vx8, 4afi
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[VAMP7_MOUSE] Involved in the targeting and/or fusion of transport vesicles to their target membrane during transport of proteins from the early endosome to the lysosome. Required for heterotypic fusion of late endosomes with lysosomes and homotypic lysosomal fusion. Required for calcium regulated lysosomal exocytosis. Involved in the export of chylomicrons from the endoplasmic reticulum to the cis Golgi. Required for exocytosis of mediators during eosinophil and neutrophil degranulation, and target cell killing by natural killer cells. Required for focal exocytosis of late endocytic vesicles during phagosome formation.^[1] [ANR27_HUMAN] May be a Rab21 guanine exchange factor and regulate endosome dynamics (By similarity).

Publication Abstract from PubMed

SNAREs provide energy and specificity to membrane fusion events. Fusogenic trans-SNARE complexes are assembled from glutamine-contributing SNAREs (Q-SNAREs) embedded in one membrane and an arginine-contributing SNARE (R-SNARE) embedded in the other. Regulation of membrane fusion events is crucial for intracellular trafficking. We identify the endosomal protein Varp as an R-SNARE-binding regulator of SNARE complex formation. Varp colocalizes with and binds to VAMP7, an R-SNARE that is involved in both endocytic and secretory pathways. We present the structure of the second ankyrin repeat domain of mammalian Varp in complex with the cytosolic portion of VAMP7. The VAMP7-SNARE motif is trapped between Varp and the VAMP7 longin domain, and hence Varp kinetically inhibits the ability of VAMP7 to form SNARE complexes. This inhibition will be increased when Varp can also bind to other proteins present on the same membrane as VAMP7, such as Rab32-GTP.

The binding of Varp to VAMP7 traps VAMP7 in a closed, fusogenically inactive conformation.,Schafer IB, Hesketh GG, Bright NA, Gray SR, Pryor PR, Evans PR, Luzio JP, Owen DJ Nat Struct Mol Biol. 2012 Dec;19(12):1300-9. doi: 10.1038/nsmb.2414. Epub 2012, Oct 28. PMID:23104059^[2]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Braun V, Fraisier V, Raposo G, Hurbain I, Sibarita JB, Chavrier P, Galli T, Niedergang F. TI-VAMP/VAMP7 is required for optimal phagocytosis of opsonised particles in macrophages. EMBO J. 2004 Oct 27;23(21):4166-76. Epub 2004 Oct 7. PMID:15470500 doi:http://dx.doi.org/10.1038/sj.emboj.7600427
↑ Schafer IB, Hesketh GG, Bright NA, Gray SR, Pryor PR, Evans PR, Luzio JP, Owen DJ. The binding of Varp to VAMP7 traps VAMP7 in a closed, fusogenically inactive conformation. Nat Struct Mol Biol. 2012 Dec;19(12):1300-9. doi: 10.1038/nsmb.2414. Epub 2012, Oct 28. PMID:23104059 doi:http://dx.doi.org/10.1038/nsmb.2414

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 See Also
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4b93"

@@ Line 1: / Line 1: @@
 ==Complex of Vamp7 cytoplasmic domain with 2nd ankyrin repeat domain of Varp==
-<StructureSection load='4b93' size='340' side='right' caption='[[4b93]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+<StructureSection load='4b93' size='340' side='right'caption='[[4b93]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4b93]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4B93 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4B93 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4b93]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human] and [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4B93 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4B93 FirstGlance]. <br>
 </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2vx8|2vx8]], [[4afi|4afi]]</td></tr>
 <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4b93 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4b93 OCA], [http://pdbe.org/4b93 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4b93 RCSB], [http://www.ebi.ac.uk/pdbsum/4b93 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4b93 ProSAT]</span></td></tr>
@@ Line 18: / Line 18: @@
 </div>
 <div class="pdbe-citations 4b93" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Vesicle-associated membrane protein|Vesicle-associated membrane protein]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
+[[Category: Human]]
+[[Category: Large Structures]]
+[[Category: Lk3 transgenic mice]]
 [[Category: Evans, P R]]
 [[Category: Luzio, J P]]

4b93

From Proteopedia

Revision as of 13:59, 13 March 2019

Complex of Vamp7 cytoplasmic domain with 2nd ankyrin repeat domain of Varp

Structural highlights

Function

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

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