Antifreeze protein
From Proteopedia
(Difference between revisions)
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<scene name='46/460278/Cv/4'>AFP flat surface presents Thr residues</scene> at distances which match those of the primary prism plane of ice thus allowing for favorable interactions between the protein and ice crystals. Fungal antifreeze protein (PDB code [[3vn3]])<ref>PMID:22645341</ref> is shown. | <scene name='46/460278/Cv/4'>AFP flat surface presents Thr residues</scene> at distances which match those of the primary prism plane of ice thus allowing for favorable interactions between the protein and ice crystals. Fungal antifreeze protein (PDB code [[3vn3]])<ref>PMID:22645341</ref> is shown. | ||
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| + | == 3D Structures of antifreeze protein == | ||
| + | [[Antifreeze protein 3D structures]] | ||
</StructureSection> | </StructureSection> | ||
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**[[4nuh]] – AFP – ''Leucosporidium''<br /> | **[[4nuh]] – AFP – ''Leucosporidium''<br /> | ||
**[[5b5h]] – AFP – ''Typhula ishikariensis''<br /> | **[[5b5h]] – AFP – ''Typhula ishikariensis''<br /> | ||
| + | **[[6eio]] – AFP – uncultured bacteria<br /> | ||
*AFP II | *AFP II | ||
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**[[3nla]], [[3rdn]] - aepAFP III N terminal]] - NMR<BR /> | **[[3nla]], [[3rdn]] - aepAFP III N terminal]] - NMR<BR /> | ||
**[[1c89]], [[1c8a]] – AFP III – ''Pachycara brachycephalum'' - NMR<BR /> | **[[1c89]], [[1c8a]] – AFP III – ''Pachycara brachycephalum'' - NMR<BR /> | ||
| - | **[[ | + | **[[5xqn]], [[5xqp]] – ZeAFP III – ''Zoarces elongatus'' <br /> |
| + | **[[2lx2]], [[2lx3]] – ZeAFP III - NMR<br /> | ||
| + | **[[5xqr]], [[5xqu]], [[5xqv]], [[5xr0]] – ZeAFP III (mutant)<br /> | ||
}} | }} | ||
== References == | == References == | ||
<references/> | <references/> | ||
[[Category:Topic Page]] | [[Category:Topic Page]] | ||
Revision as of 09:54, 19 March 2019
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3D Structures of antifreeze protein
Updated on 19-March-2019
References
- ↑ Jorov A, Zhorov BS, Yang DS. Theoretical study of interaction of winter flounder antifreeze protein with ice. Protein Sci. 2004 Jun;13(6):1524-37. PMID:15152087 doi:http://dx.doi.org/10.1110/ps.04641104
- ↑ Kondo H, Hanada Y, Sugimoto H, Hoshino T, Garnham CP, Davies PL, Tsuda S. Ice-binding site of snow mold fungus antifreeze protein deviates from structural regularity and high conservation. Proc Natl Acad Sci U S A. 2012 Jun 12;109(24):9360-5. Epub 2012 May 29. PMID:22645341 doi:10.1073/pnas.1121607109
