6mzz
From Proteopedia
(Difference between revisions)
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- | '''Unreleased structure''' | ||
- | + | ==Fluoroacetate dehalogenase, room temperature structure, using first 1 degree of total 3 degree oscillation== | |
+ | <StructureSection load='6mzz' size='340' side='right'caption='[[6mzz]], [[Resolution|resolution]] 1.80Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[6mzz]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6MZZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6MZZ FirstGlance]. <br> | ||
+ | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr> | ||
+ | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6muy|6muy]]</td></tr> | ||
+ | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Haloacetate_dehalogenase Haloacetate dehalogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.8.1.3 3.8.1.3] </span></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6mzz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6mzz OCA], [http://pdbe.org/6mzz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6mzz RCSB], [http://www.ebi.ac.uk/pdbsum/6mzz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6mzz ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [[http://www.uniprot.org/uniprot/DEHA_RHOPA DEHA_RHOPA]] Catalyzes the hydrolytic defluorination of fluoroacetate to produce glycolate. Has lower activity towards bromoacetate and chloroacetate.<ref>PMID:21510690</ref> <ref>PMID:21510690</ref> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | A fixed-target approach to high-throughput room-temperature serial synchrotron crystallography with oscillation is described. Patterned silicon chips with microwells provide high crystal-loading density with an extremely high hit rate. The microfocus, undulator-fed beamline at CHESS, which has compound refractive optics and a fast-framing detector, was built and optimized for this experiment. The high-throughput oscillation method described here collects 1-5 degrees of data per crystal at room temperature with fast (10 degrees s(-1)) oscillation rates and translation times, giving a crystal-data collection rate of 2.5 Hz. Partial datasets collected by the oscillation method at a storage-ring source provide more complete data per crystal than still images, dramatically lowering the total number of crystals needed for a complete dataset suitable for structure solution and refinement - up to two orders of magnitude fewer being required. Thus, this method is particularly well suited to instances where crystal quantities are low. It is demonstrated, through comparison of first and last oscillation images of two systems, that dose and the effects of radiation damage can be minimized through fast rotation and low angular sweeps for each crystal. | ||
- | + | Fixed-target serial oscillation crystallography at room temperature.,Wierman JL, Pare-Labrosse O, Sarracini A, Besaw JE, Cook MJ, Oghbaey S, Daoud H, Mehrabi P, Kriksunov I, Kuo A, Schuller DJ, Smith S, Ernst OP, Szebenyi DME, Gruner SM, Miller RJD, Finke AD IUCrJ. 2019 Feb 23;6(Pt 2):305-316. doi: 10.1107/S2052252519001453. eCollection, 2019 Mar 1. PMID:30867928<ref>PMID:30867928</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
+ | <div class="pdbe-citations 6mzz" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
+ | [[Category: Haloacetate dehalogenase]] | ||
+ | [[Category: Large Structures]] | ||
+ | [[Category: Besaw, J]] | ||
+ | [[Category: Finke, A D]] | ||
+ | [[Category: Gruner, S M]] | ||
[[Category: Mehrabi, P]] | [[Category: Mehrabi, P]] | ||
+ | [[Category: Miller, R J.D]] | ||
[[Category: Pare-Labrosse, O]] | [[Category: Pare-Labrosse, O]] | ||
- | [[Category: Gruner, S.M]] | ||
- | [[Category: Besaw, J]] | ||
- | [[Category: Finke, A.D]] | ||
- | [[Category: Miller, R.J.D]] | ||
[[Category: Sarrachini, A]] | [[Category: Sarrachini, A]] | ||
- | [[Category: Wierman, J | + | [[Category: Wierman, J L]] |
+ | [[Category: Defluorinase]] | ||
+ | [[Category: Dehalogenase]] | ||
+ | [[Category: Hydrolase]] |
Revision as of 06:43, 27 March 2019
Fluoroacetate dehalogenase, room temperature structure, using first 1 degree of total 3 degree oscillation
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