Avidin 3D structures

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	* Shwanavidin		* Shwanavidin
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-	**[[3szi]], [[3szh]] – SdAv – ''Shewanella dentrifica''<br />
-	**[[3t2x]] – SdAv (mutant)<br />
-	**[[3szj]] – SdAv + biotin<br />
-	**[[3t2w]] – SdAv (mutant) + biotin<br />
-
-	* Rhizavidin
-
-	**[[3ew1]] – RhiAv – ''Rhizobium etli''<br />
-	**[[3ew2]] – RhiAV+biotin<br />
-
-	* Xenavidin
-
-	**[[2uz2]], [[2uyw]] – XenAv – frog<br />
-
-	* Tamavidin
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-	**[[2zsc]] – TanAv – Tamogitake mushroom
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-	* Bradavidin
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-	**[[4ggr]], [[4ggt]] – BjAv – ''Bradyrhizobium japonicum''<br />
-	**[[4ggz]] – BjAv + biotin<br />
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-	*Hoefavidin
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-	**[[4z6j]] – HpAv – ''Hoeflea phototrophica''<br />
-	**[[4z27]] – HpAv short <br />
-	**[[4z28]] – HpAv short + biotin <br />
-	**[[4z2p]], [[4z2v]], [[4z2o]] – HpAv short + peptide <br />
-
-	*Shwanavidin
	**[[3szi]], [[3szh]] – SdAv – ''Shewanella dentrifica''<br />		**[[3szi]], [[3szh]] – SdAv – ''Shewanella dentrifica''<br />

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Revision as of 10:30, 28 March 2019

3D structures of Avidin

Updated on 28-March-2019

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• Avidin

• • 3fdc, 2jgs, 2c4i, 1vyo, 1rav, 1ave – cAv – chicken
    
  • 2a5b, 2a5c, 2a8g – cAv+deoxyribose
    
  • 1nqn, 2cam, 4bcs, 4u46, 5lur – cAv (mutant)
    
  • 1ldo, 1ldq, 1lel, 1ij8, 1avd, 2avi, 3vgw, 3vhh, 3vhi, 3vhm, 4i60, 4jhq, 5hlm, 5iru, 5irw, 5myq – cAV + biotin derivative
    
  • 5chk – cAV+ HABA
    
  • 3szh, 3szi – SdAV – Shewanella denitrificans
    
  • 3t2x – SdAV (mutant)
    
  • 3szj – SdAV + biotin
    
  • 3t2w – SdAV (mutant) + biotin

• Streptavidin full length

• • 2bc3, 5vcq, 5n8t – StrAv - Streptomyces avidinii
    
  • 2qcb – StrAv+ biotin derivative
    
  • 4dne - StrAv (mutant)+biotin derivative
    
  • 5n99, 5n8w, 5n8j, 5n8e, 5n8b, 5n89, 5n7x - StrAv + peptide
    

• Streptavidin core residues 38-183

• • 1swa, 1swb, 1swc, 1ry1, 2iza, 2izb, 2izc, 2izd, 2ize, 2rta, 2rtb, 2rtc, 3ry1, 4gd9. 4gda, 4gjs, 4jnj - StrAv
    
  • 1swh, 1swj, 1swl, 1swo, 1swq, 1sws, 2y3e, 3t6l, 4bx6, 4bx5, 3mm0, 3pk2, 3rds, 3rdx, 3re5, 3re6, 4gjv,1rxj, 1rxk, 1nqm, 1kff, 1kl4, 1luq, 1mm9, 1moy, 1n4j 1n7y, 1n9y - StrAv (mutant)
    
  • 1rst, 1rsu, 4jo6 - StrAv + strep-tag II peptide
    
  • 1nbx, 1swf, 1swu, 1kl3, 1kl5 - StrAv (mutant) + strep-tag II peptide
    
  • 1stp, 2izf, 2izg, 2izh, 2izi, 2izj, 2rtd, 2rte, 2rtf, [[2rtg, 4gda, 1mk5, 1swd, 1swe, 2f01, 2gh7, 3ry2 - StrAv +biotin
    
  • 1df8, 1mep, 1n43, 1n9m, 1ndj, 1swg, 3rdm, 3rdo, 4ekv, 6aul, 4yvb, 1swk, 1swn, 1swp, 1swr, 1swt, 3mg5, 2y3f, 3t6f, 3wyq - StrAv (mutant)+biotin
    
  • 1lcv, 1lcw, 1lcz, 1i9h, 2izl, 2rtl, 2rtm, 2rtn, 2rto, 2rtp, 2rtq, 2rtr, 5jd2, 5vkx, 5vl5, 5vl8, 5wba, 6anx, 6gh7, 4irw, 2wpu, 4cpf, 4cpe, 3wyp, 5wbc, 5l3y, 5k68, 5k67 – StrAv +biotin derivative
    
  • 1nc9, 3rdq, 6auc, 6aue, 6auh, 6auo, 6fh8, 6fry, 1rxh, 5wbb, 5wbd, 6ess, 6esu, 6gmi, 5f2b, 5cse, 4oka, 4cpi, 4cph, 4bx7, 3x00, 3wzq, 3wzp, 3wzn, 3wzo - StrAv (mutant)+biotin derivative
    
  • 3rdu, 5to2 - StrAv (mutant) + PEG
    
  • 1pts, 1sld, 1sle, 1slg, 1str, 1sts, 1vwa, 1vwb, 1vwc, 1vwd, 1vwe, 1vwf, 1vwg, 1vwh, 1vwi, 1vwj, 1vwk, 1vwl, 1vwm, 1vwn, 1vwo, 1vwp, 1vwq, 1vwr, 2g5l - StrAv + peptide
    
  • 1slf - StrAv + SO4
    
  • 1sre, 1srf, 1srg, 1srh, 1sri, 1srj - StrAv + benzoic acid ligands
    
  • 2izk, 2rth, 2rti, 2rtj, 2rtk – StrAV +glycouril
    
  • 6avk – StrAv + oxazole derivative
    
  • 5b5g, 5b5f, 4y5d, 4y59 – StrAv + pyridine derivative
    

• Streptavidin residues 1-129

• • 1hy2 - StrAv + MP-1
    
  • 1hxz - StrAv + MP-2
    
  • 1hqq, 1hxl – StrAv + MP-2 (mutant)
    

• Rhizavidin

• • 3ew1 – RhiAv – Rhizobium etli
    
  • 3ew2 – RhiAV+biotin

• Xenavidin

• • 2uz2, 2uyw – XenAv – frog

• Tamavidin

• • 2zsc – TanAv – Tamogitake mushroom

• Bradavidin

• • 4ggr, 4ggt – BjAv – Bradyrhizobium japonicum
    
  • 4ggz – BjAv + biotin
    

• Hoefavidin

• • 4z6j – HpAv – Hoeflea phototrophica
    
  • 4z27 – HpAv short
    
  • 4z28 – HpAv short + biotin
    
  • 4z2p, 4z2v, 4z2o – HpAv short + peptide
    

• Shwanavidin

• • 3szi, 3szh – SdAv – Shewanella dentrifica
    
  • 3t2x – SdAv (mutant)
    
  • 3szj – SdAv + biotin
    
  • 3t2w – SdAv (mutant) + biotin
    

• Zebavidin

• • 4bj8 – Av – zebrafish
    

• Avidin-related protein AVR2

• • 1wbi – cAVR2
    

• Avidin-related protein AVR4

• • 2fhl – cAVR4+biotinyl p-nitroaniline
    
  • 2of9, 2ofa, 1y53, 3mm0 - cAVR4 (mutant)
    
  • 2fhn, 2of8, 2ofb - cAVR4 (mutant)+biotinyl p-nitroaniline
    
  • 1y52, 1y55 - cAVR4 (mutant)+biotin
    
  • 2mf6 - cAVR4/Av (mutant)+biotin – NMR
    

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