6a5f
From Proteopedia
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- | '''Unreleased structure''' | ||
- | The | + | ==The structure of [4+2] and [6+4] cyclase in the biosynthetic pathway of nargenicin== |
+ | <StructureSection load='6a5f' size='340' side='right'caption='[[6a5f]], [[Resolution|resolution]] 2.05Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[6a5f]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Nocardia_argentinensis_atcc_31306 Nocardia argentinensis atcc 31306]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6A5F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6A5F FirstGlance]. <br> | ||
+ | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6a5f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6a5f OCA], [http://pdbe.org/6a5f PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6a5f RCSB], [http://www.ebi.ac.uk/pdbsum/6a5f PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6a5f ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Pericyclic reactions are powerful transformations for the construction of carbon-carbon and carbon-heteroatom bonds in organic synthesis. Their role in biosynthesis is increasingly apparent, and mechanisms by which pericyclases can catalyse reactions are of major interest(1). [4+2] cycloadditions (Diels-Alder reactions) have been widely used in organic synthesis(2) for the formation of six-membered rings and are now well-established in biosynthesis(3-6). [6+4] and other 'higher-order' cycloadditions were predicted(7) in 1965, and are now increasingly common in the laboratory despite challenges arising from the generation of a highly strained ten-membered ring system(8,9). However, although enzyme-catalysed [6+4] cycloadditions have been proposed(10-12), they have not been proven to occur. Here we demonstrate a group of enzymes that catalyse a pericyclic [6+4] cycloaddition, which is a crucial step in the biosynthesis of streptoseomycin-type natural products. This type of pericyclase catalyses [6+4] and [4+2] cycloadditions through a single ambimodal transition state, which is consistent with previous proposals(11,12). The [6+4] product is transformed to a less stable [4+2] adduct via a facile Cope rearrangement, and the [4+2] adduct is converted into the natural product enzymatically. Crystal structures of three pericyclases, computational simulations of potential energies and molecular dynamics, and site-directed mutagenesis establish the mechanism of this transformation. This work shows how enzymes are able to catalyse concerted pericyclic reactions involving ambimodal transition states. | ||
- | + | Enzyme-catalysed [6+4] cycloadditions in the biosynthesis of natural products.,Zhang B, Wang KB, Wang W, Wang X, Liu F, Zhu J, Shi J, Li LY, Han H, Xu K, Qiao HY, Zhang X, Jiao RH, Houk KN, Liang Y, Tan RX, Ge HM Nature. 2019 Apr;568(7750):122-126. doi: 10.1038/s41586-019-1021-x. Epub 2019 Mar, 13. PMID:30867595<ref>PMID:30867595</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
+ | <div class="pdbe-citations 6a5f" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
+ | [[Category: Large Structures]] | ||
+ | [[Category: Nocardia argentinensis atcc 31306]] | ||
+ | [[Category: Ge, H M]] | ||
+ | [[Category: Zhang, B]] | ||
+ | [[Category: Biosynthesis]] | ||
+ | [[Category: Biosynthetic protein]] | ||
+ | [[Category: Nargenicin]] |
Revision as of 07:42, 10 April 2019
The structure of [4+2] and [6+4] cyclase in the biosynthetic pathway of nargenicin
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