This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6abm

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 6abm is ON HOLD until Paper Publication
+
==Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with pTmdZLys==
-
 
+
<StructureSection load='6abm' size='340' side='right'caption='[[6abm]], [[Resolution|resolution]] 1.37&Aring;' scene=''>
-
Authors:
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[6abm]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ABM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6ABM FirstGlance]. <br>
-
Description:
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=9VR:(2S)-2-azanyl-6-[[4-[3-(trifluoromethyl)-1,2-diazirin-3-yl]phenyl]methoxycarbonylamino]hexanoic+acid'>9VR</scene>, <scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
[[Category: Unreleased Structures]]
+
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6aac|6aac]], [[6aad|6aad]], [[6aan|6aan]], [[6aao|6aao]], [[6aap|6aap]], [[6aaq|6aaq]], [[6aaz|6aaz]], [[6ab0|6ab0]], [[6ab1|6ab1]], [[6ab2|6ab2]], [[6ab8|6ab8]], [[6abk|6abk]], [[6abl|6abl]]</td></tr>
 +
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pyrrolysine--tRNA(Pyl)_ligase Pyrrolysine--tRNA(Pyl) ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.26 6.1.1.26] </span></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6abm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6abm OCA], [http://pdbe.org/6abm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6abm RCSB], [http://www.ebi.ac.uk/pdbsum/6abm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6abm ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[[http://www.uniprot.org/uniprot/PYLS_METMA PYLS_METMA]] Catalyzes the attachment of pyrrolysine to tRNA(Pyl). Pyrrolysine is a lysine derivative encoded by the termination codon UAG (By similarity).
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Kuratani, M]]
 +
[[Category: Yanagisawa, T]]
 +
[[Category: Yokoyama, S]]
 +
[[Category: Aminoacyl-trna synthetase]]
 +
[[Category: Non-natural amino acid]]
 +
[[Category: Pyrrolysyl-trna synthetase]]
 +
[[Category: Translation]]
 +
[[Category: Trna]]

Revision as of 05:50, 17 April 2019

Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with pTmdZLys

PDB ID 6abm

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools