5n0l
From Proteopedia
(Difference between revisions)
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==The structure of the cofactor binding GAF domain of the nutrient sensor CodY from Clostridium difficile== | ==The structure of the cofactor binding GAF domain of the nutrient sensor CodY from Clostridium difficile== | ||
- | <StructureSection load='5n0l' size='340' side='right' caption='[[5n0l]], [[Resolution|resolution]] 1.68Å' scene=''> | + | <StructureSection load='5n0l' size='340' side='right'caption='[[5n0l]], [[Resolution|resolution]] 1.68Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[5n0l]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5N0L OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5N0L FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5n0l]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_difficilis"_hall_and_o'toole_1935 "bacillus difficilis" hall and o'toole 1935]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5N0L OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5N0L FirstGlance]. <br> |
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ILE:ISOLEUCINE'>ILE</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ILE:ISOLEUCINE'>ILE</scene></td></tr> | ||
+ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">codY, BN1095_790003, BN1096_560190, BN1097_540194 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1496 "Bacillus difficilis" Hall and O'Toole 1935])</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5n0l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5n0l OCA], [http://pdbe.org/5n0l PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5n0l RCSB], [http://www.ebi.ac.uk/pdbsum/5n0l PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5n0l ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5n0l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5n0l OCA], [http://pdbe.org/5n0l PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5n0l RCSB], [http://www.ebi.ac.uk/pdbsum/5n0l PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5n0l ProSAT]</span></td></tr> | ||
</table> | </table> | ||
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<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
- | + | Toxin synthesis and endospore formation are two of the most critical factors that determine the outcome of infection by Clostridioides difficile. The two major toxins, TcdA and TcdB, are the principal factors causing damage to the host. Spores are the infectious form of C. difficile, permit survival of the bacterium during antibiotic treatment and are the predominant cell form that leads to recurrent infection. Toxin production and sporulation have their own specific mechanisms of regulation, but they share negative regulation by the global regulatory protein CodY. Determining the extent of such regulation and its detailed mechanism is important for understanding the linkage between two apparently independent biological phenomena and raises the possibility of creating new ways of limiting infection. The work described here shows that a codY null mutant of a hypervirulent (ribotype 027) strain is even more virulent than its parent in a mouse model of infection and that the mutant expresses most sporulation genes prematurely during exponential growth phase. Moreover, examining the expression patterns of mutants producing CodY proteins with different levels of residual activity revealed that expression of the toxin genes is dependent on total CodY inactivation, whereas most sporulation genes are turned on when CodY activity is only partially diminished. These results suggest that, in wild-type cells undergoing nutrient limitation, sporulation genes can be turned on before the toxin genes. | |
- | + | Impact of CodY protein on metabolism, sporulation and virulence in Clostridioides difficile ribotype 027.,Daou N, Wang Y, Levdikov VM, Nandakumar M, Livny J, Bouillaut L, Blagova E, Zhang K, Belitsky BR, Rhee K, Wilkinson AJ, Sun X, Sonenshein AL PLoS One. 2019 Jan 30;14(1):e0206896. doi: 10.1371/journal.pone.0206896., eCollection 2019. PMID:30699117<ref>PMID:30699117</ref> | |
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Bacillus difficilis hall and o'toole 1935]] | ||
+ | [[Category: Large Structures]] | ||
[[Category: Blagova, E V]] | [[Category: Blagova, E V]] | ||
[[Category: Levdikov, V M]] | [[Category: Levdikov, V M]] |
Revision as of 07:38, 24 April 2019
The structure of the cofactor binding GAF domain of the nutrient sensor CodY from Clostridium difficile
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