4yf2

From Proteopedia

(Difference between revisions)

Revision as of 07:05, 12 June 2019

Crystal structure of mouse sperm C-type lysozyme-like protein 1

Structural highlights

4yf2 is a 3 chain structure with sequence from Lk3 transgenic mice. This structure supersedes the now removed PDB entry 2goi. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Gene:	Spaca3, Lyc3, Lyzl3, Sllp1 (LK3 transgenic mice)
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[SACA3_MOUSE] Sperm surface membrane protein that may be involved in sperm-egg plasma membrane adhesion and fusion during fertilization. It could be a potential receptor for the egg oligosaccharide residue N-acetylglucosamine, which is present in the extracellular matrix over the egg plasma membrane. The processed form has no detectable bacteriolytic activity in vitro (By similarity).

Publication Abstract from PubMed

Sperm lysozyme-like protein 1 (SLLP1) is one of the lysozyme-like proteins predominantly expressed in mammalian testes that lacks bacteriolytic activity, localizes in the sperm acrosome, and exhibits high affinity for an oolemmal receptor, SAS1B. The crystal structure of mouse SLLP1 (mSLLP1) was determined at 2.15 A resolution. mSLLP1 monomer adopts a structural fold similar to that of chicken/mouse lysozymes retaining all four canonical disulfide bonds. mSLLP1 is distinct from c-lysozyme by substituting two essential catalytic residues (E35T/D52N), exhibiting different surface charge distribution, and by forming helical filaments approximately 75 A in diameter with a 25 A central pore comprised of six monomers per helix turn repeating every 33 A. Cross-species alignment of all reported SLLP1 sequences revealed a set of invariant surface regions comprising a characteristic fingerprint uniquely identifying SLLP1 from other c-lysozyme family members. The fingerprint surface regions reside around the lips of the putative glycan-binding groove including three polar residues (Y33/E46/H113). A flexible salt bridge (E46-R61) was observed covering the glycan-binding groove. The conservation of these regions may be linked to their involvement in oolemmal protein binding. Interaction between SLLP1 monomer and its oolemmal receptor SAS1B was modeled using protein-protein docking algorithms, utilizing the SLLP1 fingerprint regions along with the SAS1B conserved surface regions. This computational model revealed complementarity between the conserved SLLP1/SAS1B interacting surfaces supporting the experimentally observed SLLP1/SAS1B interaction involved in fertilization.

Sperm Lysozyme-Like Protein 1 (SLLP1), an intra-acrosomal oolemmal-binding sperm protein, reveals filamentous organization in protein crystal form.,Zheng H, Mandal A, Shumilin IA, Chordia MD, Panneerdoss S, Herr JC, Minor W Andrology. 2015 Jul;3(4):756-71. doi: 10.1111/andr.12057. PMID:26198801^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Zheng H, Mandal A, Shumilin IA, Chordia MD, Panneerdoss S, Herr JC, Minor W. Sperm Lysozyme-Like Protein 1 (SLLP1), an intra-acrosomal oolemmal-binding sperm protein, reveals filamentous organization in protein crystal form. Andrology. 2015 Jul;3(4):756-71. doi: 10.1111/andr.12057. PMID:26198801 doi:http://dx.doi.org/10.1111/andr.12057

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4yf2"

@@ Line 1: / Line 1: @@
 ==Crystal structure of mouse sperm C-type lysozyme-like protein 1==
-<StructureSection load='4yf2' size='340' side='right' caption='[[4yf2]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
+<StructureSection load='4yf2' size='340' side='right'caption='[[4yf2]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4yf2]] is a 3 chain structure. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2goi 2goi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YF2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YF2 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4yf2]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2goi 2goi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YF2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YF2 FirstGlance]. <br>
-</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yf2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yf2 OCA], [http://pdbe.org/4yf2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4yf2 RCSB], [http://www.ebi.ac.uk/pdbsum/4yf2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4yf2 ProSAT]</span></td></tr>
+</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Spaca3, Lyc3, Lyzl3, Sllp1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yf2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yf2 OCA], [http://pdbe.org/4yf2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4yf2 RCSB], [http://www.ebi.ac.uk/pdbsum/4yf2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4yf2 ProSAT]</span></td></tr>
 </table>
 == Function ==
@@ Line 21: / Line 22: @@
 __TOC__
 </StructureSection>
+[[Category: Large Structures]]
+[[Category: Lk3 transgenic mice]]
 [[Category: Herr, J C]]
 [[Category: Mandal, A]]

4yf2

From Proteopedia

Revision as of 07:05, 12 June 2019

Crystal structure of mouse sperm C-type lysozyme-like protein 1

Structural highlights

Function

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

Personal tools

Navigation

Search

Toolbox