Exonuclease
From Proteopedia
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| - | == 3D Structures of exonuclease == | ||
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| - | Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} | ||
| - | {{#tree:id=OrganizedByTopic|openlevels=0| | ||
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| - | *ExN-I | ||
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| - | **[[3qea]], [[3qeb]], [[5v04]], [[5v05]], [[5v06]], [[5v0b]], [[5v0c]], [[5v0d]], [[5v0e]], [[5uzv]] - hExN-I + DNA - human<br /> | ||
| - | **[[3qe9]], [[5v07]], [[5v08]], [[5v09]], [[5v0a]] – hExN-I (mutant) + DNA – human<br /> | ||
| - | **[[1fxx]], [[3c95]] – EcExN-I – ''Escherichia coli''<br /> | ||
| - | **[[2qxf]] - EcExN-I + TMP<br /> | ||
| - | **[[3hl8]], [[3hp9]] - EcExN-I + inhibitor<br /> | ||
| - | **[[3c94]] - EcExN-I + DNA-binding C terminal peptide<br /> | ||
| - | **[[4jrp]], [[4jrq]], [[4js5]], [[4js4]], [[4hcc]], [[4hcb]] – EcExN-I + DNA<br /> | ||
| - | **[[4rg8]] – ExN-I (mutant) – ''Methylocaldum szegedienes''<br /> | ||
| - | **[[5fiq]], [[5fis]] – ExN-I ExN domain – silkworm<br /> | ||
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| - | *ExN-III | ||
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| - | **[[2voa]] – AfExN-III (mutant) + DNA – ''Archaeoglobus fulgidus''<br /> | ||
| - | **[[3g1k]] - MtExN-III – ''Methanothermobacter thermaautotrophicus''<br /> | ||
| - | **[[3g3c]], [[3g4t]] - MtExN-III + DNA<br /> | ||
| - | **[[3fzi]], [[3g8v]], [[3g91]] - MtExN-III (mutant) <br /> | ||
| - | **[[3g00]], [[3g0r]], [[3g2c]], [[3g2d]], [[3g38]], [[3g3y]], [[3ga6]] - MtExN-III (mutant) + DNA<br /> | ||
| - | **[[3g0a]] - MtExN-III (mutant) + Mn<br /> | ||
| - | **[[1ako]] – EcExN-III | ||
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| - | *ExN-IV | ||
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| - | **[[2jc4]] – ExN-IV – ''Nisseria meningitides'' | ||
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| - | *ExN-V | ||
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| - | **[[1w36]], [[3k70]] – EcExN-V α+β+γ + DNA hairpin<br /> | ||
| - | **[[3e1s]] - EcExN-V RECD subunit<br /> | ||
| - | **[[3gp8]] - DrExN-V RECD subunit + DNA – ''Deinococcus radiodurans''<br /> | ||
| - | **[[3gpl]] - DrExN-V RECD subunit + DNA + ADPNP | ||
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| - | *ExN-VII | ||
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| - | **[[1vp7]] – ExN-VII small subunit – ''Bordetella pertussis'' | ||
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| - | *ExN-VIII | ||
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| - | **[[3h4r]] - EcExN-VIII C terminal (mutant) | ||
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| - | *ExN-X | ||
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| - | **[[4fzz]], [[4fzy]], [[4fzx]] - EcExN-X + DNA<br /> | ||
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| - | *5’ ExN or exodeoxyribonuclease | ||
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| - | **[[1ut5]], [[1ut8]] – T5-5’-ExN + metal – Bacteriophage T5<br /> | ||
| - | **[[1exn]], [[1xo1]] - T5-5’-ExN (mutant)<br /> | ||
| - | **[[5hmm]] - EpT5-5’-ExN + metal – Escherichia phage T5<br /> | ||
| - | **[[5hml]] - EpT5-5’-ExN (mutant) + metal <br /> | ||
| - | **[[5hnk]], [[5hp4]] - EpT5-5’-ExN (mutant) + metal + DNA<br /> | ||
| - | **[[1avq]] – BlExN λ (mutant) – Bacteriophage λ<br /> | ||
| - | **[[3slp]], [[4wuz]] - BlExN λ + DNA<br /> | ||
| - | **[[3sm4]] - BlExN λ (mutant) + DNA<br /> | ||
| - | **[[3k93]] – ExN – Haemophilus somnus | ||
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| - | *Exosome complex ExN see [[Exosome]] | ||
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| - | *ssDNA-specific ExN | ||
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| - | **[[5ght]] – TkExN – ''Thermococcus kodakarensis''<br /> | ||
| - | **[[5ghs]], [[5ghr]] – TkExN + polypeptide<br /> | ||
| - | **[[5f54]] – DrExN + dTMP<br /> | ||
| - | **[[5f55]] – DrExN + DNA<br /> | ||
| - | **[[5f56]] – DrExN + DNA + polypeptide<br /> | ||
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| - | *3'-5' ExN | ||
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| - | **[[4qoz]], [[4l8r]] – hExN + histone RNA hairpin-binding protein + RNA<br /> | ||
| - | **[[4yor]], [[4yot]], [[4you]] – PhExN phoexo I – ''Pyrococcus horikoshii''<br /> | ||
| - | **[[4yov]], [[4yow]], [[4yox]], [[4yoy]] – PhExN phoexo I (mutant) + DNA<br /> | ||
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| - | *5’-3’ ExN | ||
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| - | **[[6c33]] – MsExN – ''Mycobacterium smegmatis''<br /> | ||
| - | **[[6c34]], [[6c35]], [[6c36]] – MsExN (mutant)<br /> | ||
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| - | *ExN Trex | ||
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| - | **[[1y97]] – hExN Trex2<br /> | ||
| - | **[[2o4g]] - mExN Trex1 + nucleotide – mouse<br /> | ||
| - | **[[3mxj]] - mExN Trex1<br /> | ||
| - | **[[2o4i]], [[3mxi]], [[3mxm]], [[3u3y]], [[3u6f]] - mExN Trex1 (mutant) + polynucleotide<br /> | ||
| - | **[[2oa8]], [[5ywv]], [[5ywu]], [[5ywt]], [[5yws]] - mExN Trex1 + DNA<br /> | ||
| - | **[[4ynq]] - mExN Trex1 (mutant) + DNA<br /> | ||
| - | **[[3b6o]], [[3b6p]] - mExN Trex1 + ion inhibitor<br /> | ||
| - | **[[6a45]] - mExN Trex2<br /> | ||
| - | **[[6a4b]], [[6a47]] - mExN Trex2 + DNA<br /> | ||
| - | **[[6a46]] - mExN Trex2 + nucleotide<br /> | ||
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| - | *Other ExN | ||
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| - | **[[1w0h]] – hExn Eri1 nuclease domain <br /> | ||
| - | **[[1zbu]] - hExn Eri1<br /> | ||
| - | **[[1zbh]] - hExn Eri1 (mutant) + DNA<br /> | ||
| - | **[[5aho]] – hExN Apollo<br /> | ||
| - | **[[5zyw]] – hExN mitochondrial genome repair 1<br /> | ||
| - | **[[5zyv]], [[5zyu]], [[5zyt]] – hExN mitochondrial genome repair 1 + DNA<br /> | ||
| - | **[[3e2v]] – yExN <br /> | ||
| - | **[[2w45]] – H4ExN alkaline - Herpesvirus 4<br /> | ||
| - | **[[2w4b]] - H4ExN alkaline (mutant)<br /> | ||
| - | **[[3syy]] - LhExN alkaline – ''Laribacter hongkongensis''<br /> | ||
| - | **[[3sz4]] - LhExN alkaline + AMP<br /> | ||
| - | **[[3sz5]] - LhExN alkaline + polynucleotide<br /> | ||
| - | **[[4lty]], [[4lu9]], [[4m0v]] – EcExN sbcD<br /> | ||
| - | **[[6m9k]] - ExN + recombination protein BET – Escherichia phage λ<br /> | ||
| - | **[[1ir6]], [[2zxo]], [[2zxp]], [[2zxr]] – ExN Recj – ''Thermus thermophiles''<br /> | ||
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== References == | == References == | ||
Revision as of 07:56, 25 June 2019
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References
- ↑ Mukherjee D, Fritz DT, Kilpatrick WJ, Gao M, Wilusz J. Analysis of RNA exonucleolytic activities in cellular extracts. Methods Mol Biol. 2004;257:193-212. PMID:14770007 doi:http://dx.doi.org/10.1385/1-59259-750-5:193
- ↑ Breyer WA, Matthews BW. Structure of Escherichia coli exonuclease I suggests how processivity is achieved. Nat Struct Biol. 2000 Dec;7(12):1125-8. PMID:11101894 doi:10.1038/81978
