Hirudin

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 8: Line 8:
== Structural highlights ==
== Structural highlights ==
The <scene name='41/417483/Cv/4'>N-terminal tripeptide of hirudin (green) binds to the heavy chain of thrombin (magenta) and interacts with two of its active site residues: Ser195 and His57</scene><ref>PMID:1920434</ref>.
The <scene name='41/417483/Cv/4'>N-terminal tripeptide of hirudin (green) binds to the heavy chain of thrombin (magenta) and interacts with two of its active site residues: Ser195 and His57</scene><ref>PMID:1920434</ref>.
 +
 +
== 3D Structures of Hirudin ==
 +
[[Hirudin 3D structures]]
 +
</StructureSection>
</StructureSection>
== 3D Structures of Hirudin ==
== 3D Structures of Hirudin ==
Line 46: Line 50:
**[[1fph]], [[7kme]], [[1d6w]] - Hirg +hThr L&H chains+polypeptide<br />
**[[1fph]], [[7kme]], [[1d6w]] - Hirg +hThr L&H chains+polypeptide<br />
**[[1hxe]] - Hirg +hThr L&H chains+Rb<br />
**[[1hxe]] - Hirg +hThr L&H chains+Rb<br />
-
**[[1ypk]], [[1riw]], [[1mu6]], [[1mu8]], [[1mue]], [[1no9]], [[1oyt]], [[1o2g]], [[1ny2]], [[1gj4]], [[1gj5]], [[1kts]], [[1ktt]], [[1ghv]], [[1ghw]], [[1ghx]], [[1ghy]], [[1h8i]], [[1h8d]], [[1c5n]], [[1c5o]], [[1c1u]], [[1c1v]], [[1c1w]], [[1qj1]], [[1qj6]], [[1qj7]], [[1qbv]], [[1bcu]], [[1a2c]], [[1a61]], [[1a46]], [[1a5g]], [[1b5g]], [[1ad8]], [[1ai8]], [[1tom]], [[1bmm]], [[1bmn]], [[1lhc]], [[1lhd]], [[1lhe]], [[1lhf]], [[1lhg]], [[1uma]], [[1aht]], [[1fpc]], [[3hat]], [[1tmu]], [[1dwb]], [[1dwc]], [[1dwd]], [[1dwe]], [[1tmb]], [[3f68]], [[3eq0]], [[3dt0]], [[3dux]], [[3dhk]], [[2znk]], [[2zo3]], [[3d49]], [[2zhq]], [[2zi2]], [[2ziq]], [[2zff]], [[2zfp]], [[2zgb]], [[2zgx]], [[2zf0]], [[2zc9]], [[2zda]], [[2zdv]], [[3egk]], [[2pw8]], [[3c27]], [[2r2m]], [[2cf8]], [[2cf9]], [[2bdy]], [[2v3h]], [[2v3o]], [[1w7g]], [[1ype]], [[1ypg]], [[1ypj]], [[3biu]], [[3biv]], [[1doj]], [[1ypl]], [[1ypm]], [[1vzq]], [[1way]], [[1wbg]], [[1k21]], [[1k22]], [[1afe]], [[1ae8]] ,[[1a3b]], [[1a3e]], [[1vr1]], [[2bvr]], [[2bvs]], [[2bvx]], [[2bxt]], [[2bxu]], [[2gde]], [[2pks]], [[3ldx]], [[3p17]], [[1d9i]], [[1xm1]], [[6eo8]], [[6eo9]], [[1ba8]], [[1bb0]], [[1c4u]], [[1ca8]], [[1d3d]], [[1d3p]], [[1d3q]], [[1d3t]], [[1d4p]], [[1hdt]], [[1ihs]], [[1iht]], [[1o0d]], [[1qhr]], [[1tbz]], [[4ayv]], [[4ayy]], [[4az2]], [[3rlw]], [[3rly]], [[3rm0]], [[3rm2]], [[3rml]], [[3rmm]], [[3rmn]], [[3rmo]], [[3qtv]], [[3qwc]], [[3qx5]], [[4yes]] – Hirg+ hThr L&H chains+inhibitor<br />
+
**[[1ypk]], [[1riw]], [[1mu6]], [[1mu8]], [[1mue]], [[1no9]], [[1oyt]], [[1o2g]], [[1ny2]], [[1gj4]], [[1gj5]], [[1kts]], [[1ktt]], [[1ghv]], [[1ghw]], [[1ghx]], [[1ghy]], [[1h8i]], [[1h8d]], [[1c5n]], [[1c5o]], [[1c1u]], [[1c1v]], [[1c1w]], [[1qj1]], [[1qj6]], [[1qj7]], [[1qbv]], [[1bcu]], [[1a2c]], [[1a61]], [[1a46]], [[1a5g]], [[1b5g]], [[1ad8]], [[1ai8]], [[1tom]], [[1bmm]], [[1bmn]], [[1lhc]], [[1lhd]], [[1lhe]], [[1lhf]], [[1lhg]], [[1uma]], [[1aht]], [[1fpc]], [[3hat]], [[1tmu]], [[1dwb]], [[1dwc]], [[1dwd]], [[1dwe]], [[1tmb]], [[3f68]], [[3eq0]], [[3dt0]], [[3dux]], [[3dhk]], [[2znk]], [[2zo3]], [[3d49]], [[2zhq]], [[2zi2]], [[2ziq]], [[2zff]], [[2zfp]], [[2zgb]], [[2zgx]], [[2zf0]], [[2zc9]], [[2zda]], [[2zdv]], [[3egk]], [[2pw8]], [[3c27]], [[2r2m]], [[2cf8]], [[2cf9]], [[2bdy]], [[2v3h]], [[2v3o]], [[1w7g]], [[1ype]], [[1ypg]], [[1ypj]], [[3biu]], [[3biv]], [[1doj]], [[1ypl]], [[1ypm]], [[1vzq]], [[1way]], [[1wbg]], [[1k21]], [[1k22]], [[1afe]], [[1ae8]] ,[[1a3b]], [[1a3e]], [[1vr1]], [[2bvr]], [[2bvs]], [[2bvx]], [[2bxt]], [[2bxu]], [[2gde]], [[2pks]], [[3ldx]], [[3p17]], [[1d9i]], [[1xm1]], [[6eo8]], [[6eo9]], [[1ba8]], [[1bb0]], [[1c4u]], [[1ca8]], [[1d3d]], [[1d3p]], [[1d3q]], [[1d3t]], [[1d4p]], [[1hdt]], [[1ihs]], [[1iht]], [[1o0d]], [[1qhr]], [[1tbz]], [[4ayv]], [[4ayy]], [[4az2]], [[3rlw]], [[3rly]], [[3rm0]], [[3rm2]], [[3rml]], [[3rmm]], [[3rmn]], [[3rmo]], [[3qtv]], [[3qwc]], [[3qx5]], [[4yes]], [[6gbw]], [[6fjt]] – Hirg+ hThr L&H chains+inhibitor<br />
**[[2feq]], [[2fes]] – Hirg analog + hThr L&H chains+inhibitor<br />
**[[2feq]], [[2fes]] – Hirg analog + hThr L&H chains+inhibitor<br />
**[[3sha]], [[3shc]], [[3si3]], [[3si4]], [[3sv2]], [[3t5f]], [[3u98]], [[3u9a]], [[3uwj]], [[4ban]], [[4bao]], [[4e7r]], [[4loy]], [[5lpd]], [[5mjt]], [[5mls]], [[5mm6]], [[5ahg]], [[5afz]], [[5afy]], [[5af9]], [[5a2m]], [[4ufg]], [[4uff]], [[4ufe]], [[4ufd]], [[4ueh]], [[4ue7]], [[4udw]], [[4ud9]] – Hirg variant 2 + hThr L&H chains+inhibitor<br />
**[[3sha]], [[3shc]], [[3si3]], [[3si4]], [[3sv2]], [[3t5f]], [[3u98]], [[3u9a]], [[3uwj]], [[4ban]], [[4bao]], [[4e7r]], [[4loy]], [[5lpd]], [[5mjt]], [[5mls]], [[5mm6]], [[5ahg]], [[5afz]], [[5afy]], [[5af9]], [[5a2m]], [[4ufg]], [[4uff]], [[4ufe]], [[4ufd]], [[4ueh]], [[4ue7]], [[4udw]], [[4ud9]] – Hirg variant 2 + hThr L&H chains+inhibitor<br />

Revision as of 09:04, 25 July 2019

Hirudin (green) complex with glycosylated thrombin small subunit (aqua) and large subunit (magenta) (PDB entry 4htc)

Drag the structure with the mouse to rotate

3D Structures of Hirudin

Updated on 25-July-2019

References

  1. Fenton JW 2nd, Ofosu FA, Brezniak DV, Hassouna HI. Thrombin and antithrombotics. Semin Thromb Hemost. 1998;24(2):87-91. PMID:9579630 doi:http://dx.doi.org/10.1055/s-2007-995828
  2. Stamenova PK, Marchetti T, Simeonov I. Efficacy and safety of topical hirudin (Hirudex): a double-blind, placebo-controlled study. Eur Rev Med Pharmacol Sci. 2001 Mar-Apr;5(2):37-42. PMID:11863317
  3. Johnson PH. Hirudin: clinical potential of a thrombin inhibitor. Annu Rev Med. 1994;45:165-77. PMID:8198374 doi:http://dx.doi.org/10.1146/annurev.med.45.1.165
  4. Rydel TJ, Tulinsky A, Bode W, Huber R. Refined structure of the hirudin-thrombin complex. J Mol Biol. 1991 Sep 20;221(2):583-601. PMID:1920434

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky, Joel L. Sussman

Personal tools