Histone

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</StructureSection>
</StructureSection>
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== 3D Structures of histone ==
 
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Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
 
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{{#tree:id=OrganizedByTopic|openlevels=0|
 
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*Histone
 
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**[[1yqa]] – yH1 (mutant) – yeast – NMR<BR />
 
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**[[1uss]], [[1ust]], [[1uhm]] – yH1 globular domain - NMR<BR />
 
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**[[1ghc]] – cH1 – chicken - NMR<br />
 
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**[[2xd7]], [[1zr3]], [[1zr5]], [[2fxk]] – hH2A macro domain – human<BR />
 
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**[[4cay]] – hH2A +H2B<br />
 
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**[[1yd9]] – H2A macro domain – rat<BR />
 
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**[[1ku5]] – HPHA – ''Pyrococcus horikoshii''<BR />
 
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**[[1b67]], [[1b6w]], [[1a7w]], [[1hta]] – MfHMFA – ''Methanococcus fervidus''<BR />
 
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**[[1bfm]] – MfHB - NMR<BR />
 
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**[[1f1e]] – H – ''Methanopyrus kandleri''<BR />
 
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**[[1hst]] – cH5 <BR />
 
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**[[3iid]], [[3iif]] – H2A macro domain + ADP-ribose<BR />
 
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**[[2g9a]], [[2g99]], [[2h13]] – H3 + WD-repeat protein<br />
 
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**[[1pfb]] – H3 + polycomb protein – ''Strongylocentrus purpuratus''
 
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*Nucleosome core
 
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**[[6n89]], [[6n88]] – hH1 + importin – Cryo EM<br />
 
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**[[6h8p]] – hH1 + histone-lysine methyltransferase <br />
 
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**[[3r45]] - hH4 + H3-like centromeric protein + Holliday junction recognition protein<BR />
 
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**[[3nqj]], [[3nqu]] - hH4 + H3-like centromeric protein<BR />
 
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**[[5vey]] - hH2A + H2B + polyubiquitin<br />
 
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**[[5fug]] - hH2A + H2B + YL-1<br />
 
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**[[4nft]] - hH2A + H2B + ANP32E<br />
 
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**[[6miq]], [[6mio]], [[6min]] – hH3 + TFIID<br />
 
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**[[6mim]], [[6mil]] – hH3 + AF9<br />
 
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**[[5ja4]], [[5bnv]] – hH3.3 + H4 + TONSL + MCM2<br />
 
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**[[5bo0]], [[5bnx]] – hH3.2 + H4 + ASF1B + MCM2<br />
 
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**[[6mlc]] - hH4 + histone-lysine methyltransferase <br />
 
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**[[6hbo]] – hH3.3 + histone-lysine methyltransferase - NMR<br />
 
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**[[6o7g]] - XlH4 + histone-lysine methyltransferase – NMR<br />
 
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**[[3qzs]], [[3qzt]] – XlH4 + nucleosome-remodeling factor subunit BPTF – ''Xenopus laevis''<BR />
 
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**[[4h9n]], [[4h9o]], [[4h9p]], [[4h9q]], [[4h9r]], [[4h9s]], [[4hga]] - XlH3.3 (mutant) + H4 + death domain-associated protein 6<br />
 
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**[[5kdm]] - XlH3.3 + H4 + death domain-associated protein + tegument protein<br />
 
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**[[2io5]] - XlH3.1 + H4 + anti-silencing protein<BR />
 
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**[[5g2e]] - XlH2A + H2B + NAP1<br />
 
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**[[6n1z]] - XlH2A + H2B + importin<br />
 
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**[[5bsa]], [[5bs7]] – XlH3.2 + H4 + SPT2<br />
 
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**[[4eo5]] - XlH3.2 (mutant) + H4 (mutant) + histone chaperone ASF1<br />
 
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**[[4ld9]] - XlH3.2 + H4 + H2A + H2B + widom sequence reverse + SIR3<br />
 
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**[[2l5a]] - yH4/H3-like centromeric protein/SCM3<BR />
 
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**[[2jss]] - yH2A/H2B + CHZ1 – NMR<BR />
 
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**[[4wnn]] – yH32A + H2B + SPT2<br />
 
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**[[2hue]] - yH3 + H4 + anti-silencing protein<BR />
 
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**[[2xql]], [[3c9k]] - cH3.2 + H4 + H2A + H2B – EM<br />
 
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**[[4uuz]] – DmH3 + H4 + DNA replication licensing factor – ''Drosophila melanogaster''<br />
 
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**[[2yfv]], [[2yfw]] - H4 + H3-like centromeric protein + SCM3 – ''Kluyveromyces lactis''<BR />
 
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*Human nucleosome core + DNA
 
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**[[3an2]], [[4x23]] – hH4 + H2A + H2B + H3-like centromeric protein + DNA<BR />
 
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**[[3av1]], [[2av2]], [[3av2]], [[3waa]], [[3wa9]], [[3w99]], [[3w98]], [[3w97]], [[3w96]], [[5x7x]], [[3a6n]], [[3afa]], [[2cv5]], [[5jrg]], [[5gxq]], [[5gt3]], [[5gt0]], [[5gsu]], [[5gse]], [[5cpk]], [[5cpj]], [[5cpi]], [[5b33]], [[5b32]], [[5b31]], [[5b2j]], [[5b2i]], [[5b24]], [[5b0z]], [[5b0y]], [[5ay8]], [[5avc]], [[5avb]], [[5av9]], [[5av8]], [[5av6]], [[5av5]], [[5z5t]], [[4ym6]], [[4ym5]], [[5y0c]], [[5onw]], [[5ong]], [[5omx]] – hH3.2 + H4 + H2A + H2B + DNA<BR />
 
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**[[5x0y]], [[5x0x]] – hH3 + H4 + H2A + H2B + DNA + SNF2<br />
 
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**[[5z30]] – hH3.1 + H4 + H2A (mutant) + H2B + DNA <br />
 
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**[[5y0d]] – hH3.1 + H4 + H2A + H2B (mutant) + DNA <br />
 
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**[[4qlc]] – hH3 + H4 + H2A + H2B + H5 + DNA <br />
 
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**[[6r25]] – hH3 + H4 + H2A + H2B + NPAC + lysine-specific histone demethylase + DNA – Cryo EM<br />
 
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**[[3ayw]], [[3aze]], [[3azf]], [[3azg]], [[3azh]] - hH3.1 (mutant) + H4 + H2A + H2B + DNA<br />
 
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**[[6r94]], [[6r93]] - hH3.1 + H4 + H2A + H2B + DNA – Cryo EM<br />
 
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**[[6r92]], [[6r91]], [[6r90]], [[6r8z]], [[6r8y]] - hH3.1 + H4 + H2A + H2B + DNA damage-binding protein + DNA – Cryo EM<br />
 
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**[[3azi]], [[3azj]], [[3azk]], [[3azl]], [[3azm]], [[3azn]], [[5b40]] - hH3.1 + H4 (mutant) + H2A + H2B + DNA<br />
 
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**[[5e5a]] - hH3.2 + H4 + H2A + H2B + IE1 + DNA<br />
 
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**[[6hkt]] - hH3 + H2A + H2B + DNA <br />
 
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**[[5xf5]], [[5xf4]], [[5xf3]] - hH3.1 + H4 + H2A + H2B + Ru derivative + DNA<br />
 
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*Xenopus nucleosome core + DNA
 
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**[[6r1t]] - XlH3 + H2A + H2B + DNA – Cryo EM<br />
 
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**[[3mnn]], [[3o62]], [[3lz0]], [[3lz1]], [[3lel]], [[3kuy]], [[3c1b]], [[3c1c]], [[2nzd]], [[2fj7]], [[1zbb]], [[1s32]], [[1p34]], [[1p3a]], [[1p3b]], [[1p3f]], [[1p3g]], [[1p3i]], [[1p3k]], [[1p3l]], [[1p3m]], [[1p3o]], [[1p3p]], [[1m18]], [[1m19]], [[1m1a]], [[1kx3]], [[1kx4]], [[1kx5]], [[1aoi]], [[3reh]], [[3rei]], [[3rej]], [[3rek]], [[3rel]], [[3ut9]], [[3uta]], [[3utb]], [[5f99]], [[5dnn]], [[5dnm]], [[5cp6]], [[4z66]], [[4ys3]], [[4xzq]], [[5oy7]], [[5oxv]] - XlH3.2 + H4 + H2A + H2B + DNA<BR />
 
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**[[6fq8]], [[6fq6]], [[6fq5]], [[6esi]], [[6esh]], [[6esg]], [[6esf]] - XlH3.2 + H4 + H2A + H2B + DNA – Cryo EM<br />
 
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**[[5nl0]] - XlH3.2 + H4 + H2A + H2B + H1.0 + DNA<br />
 
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**[[6om3]] - XlH3.2 + H4 + H2A + H2B + origin recognition complex + DNA<br />
 
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**[[6jm9]] - XlH3.2 + H4 + H2A + H2B + histone-lysine methyltransferase + DNA – Cryo EM<br />
 
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**[[6o96]], [[6nqa]], [[6nog]], [[6nn6]], [[6nj9]], [[6jma]], [[6j99]] - XlH3.2 + H4 + H2A + H2B + histone-lysine methyltransferase + ubiquitin + DNA – Cryo EM<br />
 
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**[[6iy3]], [[6iy2]] - XlH3.2 + H4 + H2A + H2B + SNF2H + ADP + DNA – Cryo EM<br />
 
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**[[5o9g]] - XlH3.2 + H4 + H2A + H2B + CHD1 + DNA – Cryo EM<br />
 
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**[[6ftx]] - XlH3.1 + H4 + H2A + H2B + CHD1 + ubiquitin + DNA – Cryo EM<br />
 
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**[[6hts]] - XlH3.1 + H4 + H2A + H2B + RuvB + CHD1 + actin-related protein + DNA – Cryo EM<br />
 
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**[[6ne3]] - XlH3.2 (mutant) + H4 + H2A (mutant) + H2B + SNF2H + DNA – Cryo EM<br />
 
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**[[5mlu]] - XlH3.2 + H4 + H2A + H2B + PFV GAG peptide + DNA<br />
 
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**[[5kgf]] - XlH3.2 + H4 + H2A + H2B + 53BP1 + ubiquitin + DNA<br />
 
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**[[5hq2]] - XlH3.2 + H4 + H2A + H2B + SRM1 + SetD8 + DNA<br />
 
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**[[4zux]] - XlH3.2 + H4 + H2A + H2B + Saga-associated factors + polyubiquitin + UBP8 + DNA<br />
 
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**[[4xuj]] - XlH3.2 + H4 + H2A + H2B + Ru derivative + DNA<br />
 
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**[[4xu9]] - XlH3.2 (mutant) + H4 + H2A + H2B + Pt derivative + DNA<br />
 
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**[[4xu8]] - XlH3.2 + H4 + H2A + H2B (mutant) + Pt derivative + DNA<br />
 
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**[[2f8n]] - XlH3.1 + H4 + H2A + H2B + H3 + H2A macro domain + DNA<BR />
 
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**[[1zla]] – XlH3 + H4 + H2A + H2B + H3 + antigen + DNA<BR />
 
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**[[3mgp]], [[3mgq]], [[3mgr]], [[3mgs]], [[3lja]], [[3b6f]], [[3b6g]], [[4j8u]], [[4j8v]], [[4j8w]], [[4j8x]], [[4kgc]], [[5xf6]] - XlH3.2 + H4 + H2A + H2B + metal ion + DNA<BR />
 
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**[[3kxb]] - XlH3.2 (mutant) + H4 + H2A + H2B (mutant) + DNA<BR />
 
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**[[3kwq]] - XlH3.2 (mutant) + H4 + H2A + H2B + DNA<BR />
 
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**[[3mvd]] - XlH3.2 + H4 + H2A + H2B + regulator of chromosome condensation + DNA<BR />
 
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**[[3tu4]] - XlH3.2 + H4 + H2A + H2B + regulatory protein SIR3 + DNA<br />
 
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**[[4r8p]] - XlH3.2 + H4 + H2A + H2B + polycomb complex protein + ring finger protein + DNA<br />
 
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**[[6r1u]] – XlH3.2 + H4 + H2A + H2B + lysine-specific histone demethylase + DNA – Cryo EM<br />
 
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**[[6k1p]], [[6jyl]], [[6iro]] – XlH3 + H4 + H2A + H2B + ISWI + ADP + DNA – Cryo EM<br />
 
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**[[6g0l]] – XlH3 + H4 + H2A + H2B + CHD1 + DNA – Cryo EM<br />
 
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*Other nucleosome core + DNA
 
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**[[1u35]] - mH3.1 + H2A + H2B + His2A macro domain + DNA – mouse<BR />
 
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**[[5xm1]], [[5xm0]] – mH3 + H4 + H2A + H2B + DNA <br />
 
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**[[1f66]] - XlH3 + mH4 + hH2A + XlH2B + DNA<BR />
 
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**[[5b1m]], [[5b1l]] - mH3 + H4 + H2A + H2B + DNA<br />
 
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**[[2aro]], [[1tzy]], [[1hq3]], [[2hio]], [[1hio]] - cH3 + H4 + H2A + H2B<br />
 
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**[[1eqz]] - cH3 + H4 + H2A + H2B + DNA<BR />
 
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**[[2pyo]], [[2nqb]], [[3nqb]] - DmH3 + H4 + H2A + H2B + DNA <BR />
 
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**[[5wcu]] - DmH3 + H4 + H2A + H2B + H5 + DNA<br />
 
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**[[4x23]] - DmH3 + H4 + H2A + H2B + centromeric protein C + DNA<br />
 
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**[[6dzt]] - DmH3 + H4 + H2A + H2B + antibody + DNA<br />
 
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**[[6j51]], [[6j50]], [[6j4z]], [[6j4y]], [[6j4x]], [[6j4w]], [[6inq]], [[6i84]], [[6a5u]], [[6a5t]], [[6a5r]], [[6a5p]], [[6a5o]], [[6a5l]] – yH3.3 + H4 + H2A + H2B + RNA polymerase + RNA + DNA – Cryo EM<br />
 
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**[[6ir9]] – yH3.3 + H4 + H2A + H2B + RNA polymerase + SPT4 + SPT5 + RNA + DNA – Cryo EM<br />
 
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**[[6gen]], [[6gej]] – yH3 + H4 + H2A + H2B + SWI1 + actin-like protein + vacuolar protein sorting-associated + RNA + DNA – Cryo EM<br />
 
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**[[1id3]] - yH3 + H4 + H2A + H2B + DNA<BR />
 
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**[[4jjn]], [[4kud]] - yH3 + H4 + H2A.2 + H2B.2 + SIR3 + DNA<br />
 
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**[[5zbb]], [[5zba]] - yH3 + H4 + RTT109 + ASF1<br />
 
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**[[5z3v]], [[5z3u]], [[5z3t]], [[5z3o]], [[5z3l]] - yH3.2 + H4 + H2A + H2B + SNF2 + ADP + DNA – Cryo EM<br />
 
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2aro, 1tzy, 1hq3, 2hio, 1hio - cH3 + H4 + H2A + H2B
 
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**[[6fml]] – H3.2 + H4 + H2A + H2B + RuvB + actin-related protein + IES6 + DNA – ''Chaetomium thermophilum'' - Cryo EM<br />
 
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}}
 
== References ==
== References ==
<references/>
<references/>
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[[Category:Topic Page]]
[[Category:Topic Page]]

Revision as of 07:52, 31 July 2019

Yeast H3 (green), H4 (pink) and anti-silencing protein (grey) complex with sulfate, glycerol and Zn+2 ion (grey), 2hue

Drag the structure with the mouse to rotate

References

  1. ↑ Marino-Ramirez L, Kann MG, Shoemaker BA, Landsman D. Histone structure and nucleosome stability. Expert Rev Proteomics. 2005 Oct;2(5):719-29. PMID:16209651 doi:http://dx.doi.org/10.1586/14789450.2.5.719
  2. ↑ Kornberg RD. Chromatin structure: a repeating unit of histones and DNA. Science. 1974 May 24;184(4139):868-71. PMID:4825889

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Ann Taylor, Alexander Berchansky, Karsten Theis

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