Inorganic pyrophosphatase
From Proteopedia
(Difference between revisions)
| Line 11: | Line 11: | ||
</StructureSection> | </StructureSection> | ||
| - | ==3D structures of inorganic pyrophosphatase== | ||
| - | Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} | ||
| - | {{#tree:id=OrganizedByTopic|openlevels=0| | ||
| - | |||
| - | *Pyrophosphatase | ||
| - | |||
| - | **[[6c45]] – PPase – human<br /> | ||
| - | **[[1pyp]] – yPPase – yeast<br /> | ||
| - | **[[1igp]], [[1faj]], [[2eip]], [[1jfd]], [[4um4]] – EcPPase – ''Escherichia coli''<br /> | ||
| - | **[[1mjw]], [[1mjx]], [[1mjy]], [[1mjz]] - EcPPase (mutant)<br /> | ||
| - | **[[1b78]] - MjPPase – ''Methanocaldococcus jannaschii''<br /> | ||
| - | **[[1ude]] – PPase – ''Pyrococcus horikoshii''<br /> | ||
| - | **[[1twl]] – PPase – ''Pyrococcus furiosus''<br /> | ||
| - | **[[1wpm]] - BsPPase – ''Bacillus subtilis''<br /> | ||
| - | **[[1sxv]] - MtPPase – ''Mycobacterium tuberculosis''<br /> | ||
| - | **[[4ecp]] - PPase – ''Mycobacterium leprae''<br /> | ||
| - | **[[1ygz]], [[2bqx]] - HpPPase - ''Helicobacter pylori''<br /> | ||
| - | **[[3d53]], [[3emj]] - PPase – ''Rickettsia prowazekii''<br /> | ||
| - | **[[3d63]], [[3eiz]] - BpPPase – ''Burkholderia pseudomallei''<br /> | ||
| - | **[[3lo0]] - PPase – ''Ehrlichia chafeensis''<br /> | ||
| - | **[[3qu5]], [[3qub]], [[3quc]] - BtPPase (mutant) – ''Bacterioides thetaiotaomicron''<br /> | ||
| - | **[[3sw5]] – PPase – ''Bartonella henselae''<br /> | ||
| - | **[[2prd]] – PPase – ''Thermus thermophilus''<br /> | ||
| - | **[[3r6e]], [[5ty5]] – TtPPase – ''Thermococcus thioreducens''<br /> | ||
| - | **[[3q3l]] – TtPPase – neutron diffraction<br /> | ||
| - | **[[4lug]], [[5ls0]] - PPase – ''Arabidopsis thaliana''<br /> | ||
| - | **[[6mt1]], [[6mt2]] – PPase – ''Medicago truncatula''<br /> | ||
| - | |||
| - | *Pyrophosphatase binary complex | ||
| - | |||
| - | **[[1wgi]] - yPPase + Mn<br /> | ||
| - | **[[1huk]] - yPPase + Mg<br /> | ||
| - | **[[1huj]], [[2ik1]] - yPPase (mutant) + Mg<br /> | ||
| - | **[[1ino]] – EcPPase + Mn<br /> | ||
| - | **[[1ipw]], [[1obw]] - EcPPase + Mg<br /> | ||
| - | **[[1i40]] - EcPPase + Ca<br /> | ||
| - | **[[1qez]] - PPase + Mg – ''Sulfolobus acidocaldarius''<br /> | ||
| - | **[[3r5u]] – TtPPase + Mn <br /> | ||
| - | **[[3r5v]] – TtPPase + Ca<br /> | ||
| - | **[[2mjp]] - MjPPase + AMPPNP<br /> | ||
| - | **[[2eb0]] - MjPPase + Mn <br /> | ||
| - | **[[1k20]] - SgPPase + Mn – ''Streptococcus gordonii''<br /> | ||
| - | **[[1wpp]] - SgPPase + Zn<br /> | ||
| - | **[[1k23]] - BsPPase + Mn<br /> | ||
| - | **[[1wpn]] - BsPPase N terminal + Mn<br /> | ||
| - | **[[2bqy]] - HpPPas + PPi<br /> | ||
| - | **[[4z71]] - MtPPase + Mg<br /> | ||
| - | **[[4z70]] - MtPPase + Ca<br /> | ||
| - | **[[2uxs]] - MtPPase + PO4<br /> | ||
| - | **[[3ej0]] - BpPPase + pyridine derivative<br /> | ||
| - | **[[3ej2]] - BpPPase + pyrazole derivative<br /> | ||
| - | **[[3fq3]] - PPase + PO4 – ''Brucella melitensis''<br /> | ||
| - | **[[3ld3]] - PPase + PO4 – ''Anaplasma phagocytophilum''<br /> | ||
| - | **[[4qgp]] - PPase + Zn – ''Archaeoglobus fulgidus''<br /> | ||
| - | **[[3quq]], [[3qu2]] - BtPPase + Mg<br /> | ||
| - | **[[3qut]], [[3qu4]] - BtPPase (mutant) + Mg<br /> | ||
| - | **[[4xel]] – PPase + Mg – ''Pseudomonas aeruginosa''<br /> | ||
| - | **[[5wrt]] – PPase + Mg – ''Toxoplasma gondii''<br /> | ||
| - | **[[5tea]] – PPase + Ca – ''Neisseria gonorrhieae''<br /> | ||
| - | **[[5h4f]] - PPase + Zn – synthetic<br /> | ||
| - | **[[6n1c]] - PPase + Ala – ''Legionella pneumophila''<br /> | ||
| - | |||
| - | *Pyrophosphatase ternary complex | ||
| - | |||
| - | **[[1ypp]], [[1wgj]], [[1e6a]], [[1e9g]] – yPPase + PO4 + Mn<br /> | ||
| - | **[[1m38]] - yPPase + PO4 + Co<br /> | ||
| - | **[[2ihp]] - yPPase + PO4 + Mg<br /> | ||
| - | **[[117e]], [[8prk]] - yPPase (mutant) + PO4 + Mn<br /> | ||
| - | **[[2ik0]], [[2ik2]], [[2ik4]], [[2ik6]], [[2ik7]], [[2ik9]] - yPPase (mutant) + PO4 + Mg<br /> | ||
| - | **[[1wcf]] - MtPPase + PO4 + K<br /> | ||
| - | **[[4z72]] - MtPPase + PO4 + Ca<br /> | ||
| - | **[[4z74]] - MtPPase + PPi + Ca<br /> | ||
| - | **[[5kde]], [[5kdf]] - MtPPase + PPi + inhibitor<br /> | ||
| - | **[[1i6t]] - EcPPase + PPi + Ca <br /> | ||
| - | **[[2au9]] - EcPPase + PPi + Mn<br /> | ||
| - | **[[2auu]] - EcPPase + PPi + Mg<br /> | ||
| - | **[[2au7]] – EcPPase (mutant) + PO4 + Mn<br /> | ||
| - | **[[2au8]] - EcPPase + PO4 + Mn<br /> | ||
| - | **[[2haw]] - BsPPase + imidodiphosphoric acid + Mg<br /> | ||
| - | **[[3qyp]], [[3qu7]] - BtPPase (mutant) + PO4 + Ca<br /> | ||
| - | **[[3qu9]] - BtPPase (mutant) + tartarate + Mg<br /> | ||
| - | **[[3qx7]] - BtPPase + PO4 + Mg<br /> | ||
| - | **[[3tr4]] - PPase + Mg + Mn – ''Coxiella burnetii''<br /> | ||
| - | **[[3q46]] - TtPPase + PO4 + Mg<br /> | ||
| - | **[[3q5v]] - TtPPase + SO4 + Mg<br /> | ||
| - | **[[3q4w]], [[4q9m]], [[5ucq]] - TtPPase + PPi + Ca<br /> | ||
| - | |||
| - | *Pyrophosphatase quaternary complex | ||
| - | |||
| - | **[[2au6]] - EcPPase + PPi + PO4 + Mn<br /> | ||
| - | **[[2iw4]] - BsPPase + imidodiphosphoric acid + Fe + Mg + Mn<br /> | ||
| - | **[[2enx]] - PPase + imidodiphosphoric acid + Mg + Mn – ''Streptococcus agalactiae''<br /> | ||
| - | **[[3eiy]] - BpPPase + PPi + Na + K<br /> | ||
| - | **[[3gvf]] - BpPPase + PO4 + Na + K<br /> | ||
| - | **[[3qxg]] - BtPPase + PO4 + Mg + Ca>נר .< | ||
| - | **[[4z73]] - MtPPase + PPi + PO4 + Mn<br /> | ||
| - | |||
| - | *NADH pyrophosphatase | ||
| - | |||
| - | **[[1vk6]], [[2gb5]] – EcPPase + Zn<br /> | ||
| - | |||
| - | *Proton pyrophosphatase | ||
| - | |||
| - | **[[4a01]] – PPase + imidodiphosphoric acid + Mg + K – ''Vigna radiata'' | ||
| - | }} | ||
== References == | == References == | ||
<references/> | <references/> | ||
[[Category:Topic Page]] | [[Category:Topic Page]] | ||
Revision as of 08:16, 28 August 2019
| |||||||||||
References
- ↑ Harold FM. Inorganic polyphosphates in biology: structure, metabolism, and function. Bacteriol Rev. 1966 Dec;30(4):772-94. PMID:5342521
- ↑ Chao TC, Huang H, Tsai JY, Huang CY, Sun YJ. Kinetic and structural properties of inorganic pyrophosphatase from the pathogenic bacterium Helicobacter pylori. Proteins. 2006 Nov 15;65(3):670-80. PMID:16988955 doi:10.1002/prot.21093
