Jumonji domain-containing protein

==3D structures of jumonji domain-containing protein ==

Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}

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*Jmjd2a (Lysine-specific demethylase 4A)

**[[2gf7]], [[2qqr]], [[5d6w]], [[5d6x]] – hJmjd2a double TUDOR domain – human <br />

**[[2gp3]] – hJmjd2a catalytic domain + Fe<br />

**[[5fyc]], [[5tvs]] – hJmjd2a catalytic domain + Ni<br />

*Jmjd2a binary complex with peptide

**[[2gfa]], [[5d6y]] – hJmjd2a double TUDOR domain + peptide with trimethyllysine<br />

**[[2qqs]] – hJmjd2a double TUDOR domain + histone H4 peptide with trimethyllysine<br />

**[[2oq6]], [[2os2]] – hJmjd2a catalytic domain + Ni + histone H3 peptide with trimethyllysine <br />

**[[2ot7]] – hJmjd2a catalytic domain + Ni + histone H3 peptide with methyllysine <br />

**[[2pxj]] – hJmjd2a catalytic domain + Fe + histone H3 peptide with methyllysine <br />

**[[2ox0]] – hJmjd2a catalytic domain + Ni + histone H3 peptide with dimethyllysine <br />

**[[5ly2]], [[5ly1]] – hJmjd2a catalytic domain + Ni + peptide inhibitor <br />

**[[6hgt]] – hJmjd2a catalytic domain + Zn + oxalylglycine + histone peptide <br />

**[[5fwe]], [[6h8p]] – hJmjd2a catalytic domain + Ni + Zn + oxalylglycine + histone peptide <br />

*Jmjd2a binary complex with other molecules

**[[2oq7]] – hJmjd2a catalytic domain + Ni + oxalylglycine <br />

**[[2vd7]], [[2wwj]], [[3njy]], [[3pdq]], [[3rvh]], [[4gd4]], [[4ai9]], [[4bis]], [[4ura]], [[5fpv]] – hJmjd2a catalytic domain + Ni + inhibitor <br />

**[[2gp5]] – hJmjd2a catalytic domain + Fe + α-ketoglutarate <br />

**[[2ybk]], [[5tvr]] – hJmjd2a catalytic domain + Ni + α-ketoglutarate derivative<br />

**[[5anq]] – hJmjd2a catalytic domain + Fe + inhibitor<br />

**[[5a7n]], [[5a7o]], [[5a7p]], [[5a7q]], [[5a7s]], [[5a7w]], [[5a80]] – hJmjd2a catalytic domain + Mn + inhibitor<br />

**[[5f2s]], [[5f2w]], [[5f32]], [[5f37]], [[5f39]], [[5f3c]], [[5f3e]], [[5f3g]], [[5f3i]], [[6cg1]], [[6cg2]], [[5vmp]], [[5vgi]], [[5var]], [[6h4o]], [[6h4p]], [[6h4q]], [[6h4r]], [[6h4s]], [[6h4t]], [[6h4u]], [[6h4v]], [[6h4w]], [[6h4x]], [[6h4y]], [[6h4z]] – hJmjd2a catalytic domain + Zn + inhibitor<br />

**[[6g5w]], [[6g5x]] – hJmjd2a catalytic domain + Zn + Ni + inhibitor<br />

**[[5fy8]] – hJmjd2a catalytic domain + Ni + threo-isocitrate<br />

**[[5fyi]] – hJmjd2a catalytic domain + Ni + pyruvate<br />

**[[5fyh]] – hJmjd2a catalytic domain + Mn + fumarate<br />

*Jmjd2a ternary complex

**[[2q8c]], [[2ybp]], [[2ybs]] – hJmjd2a catalytic domain + Fe + histone H3 peptide with trimethyllysine + α-ketoglutarate derivative<br />

**[[2q8d]] – hJmjd2a catalytic domain + Fe + histone H3 peptide with trimethyllysine + succinate <br />

**[[2q8e]], [[2p5b]] – hJmjd2a catalytic domain + Fe + histone H3 peptide with trimethyllysine + oxalylglycine <br />

**[[4v2v]], [[4v2w]] – hJmjd2a catalytic domain + Ni + histone H3 peptide with trimethyllysine + oxalylglycine <br />

**[[3u4s]] – hJmjd2a catalytic domain + Ni + histone H3 peptide with trimethyllysine + oxalylcysteine <br />

*Jmjd1a (Lysine-specific demethylase 5A; KDM5A)

**[[5v9p]], [[5v9t]], [[5iwf]], [[5iw0]], [[5ivy]], [[5ivv]], [[5ivj]], [[5ivf]], [[5ive]], [[5ivc]], [[5ivb]], [[5isl]], [[6bh5]], [[6bh4]], [[6bh3]], [[6bh2]], [[6bh1]], [[6bh0]], [[6bgz]], [[6bgy]], [[6bgx]], [[6bgw]], [[6bgv]], [[6bgu]], [[6dq4]], [[6dq5]], [[6dq6]], [[6dq7]], [[6dq8]], [[6dq9]], [[6dqa]], [[6dqb]], [[6dqc]], [[6dqd]], [[6dqe]], [[6dqf]] – hJmj1a + inhibitor <br />

**[[5k4l]], [[5ceh]] – hJmj1a + inhibitor + peptide<br />

**[[5c11]] – hJmj1a PHD finger domain + H3 peptide<br />

**[[5e6h]] – hJmj1a residues 1-87, 348-588 + Mn + oxoglutarate<br />

**[[4tn7]] – mJmj1a residues 36-364 + NO + Fe + H3 peptide - mouse <br />

**[[4qxh]], [[4qxb]] – mJmj1a residues 36-364 + Ni + oxalylglycine <br />

**[[4qxc]] – mJmj1a residues 36-364 + Ni + oxalylglycine + H3 peptide <br />

**[[4qx8]], [[4qx7]], [[4qwn]] – mJmj1a residues 36-364 + Ni + oxoglutarate + H3 peptide <br />

* Lysine-specific demethylase 5B; KDM5B

**[[6h50]], [[6h51]], [[6h52]], [[6ein]], [[6eiu]], [[6eiy]], [[6ej0]], [[6ej1]], [[6ek6]] – hLSD5B Jmj domain + inhibitor + Zn + Mn<br />

* Lysine-specific demethylase 5C; KDM5C; JARID1C

**[[5fwj]] – hLSD5C Jmj domain + inhibitor<br />

**[[2jrz]] – hLSD5C Bright/ARID domain - NMR<br />

*lysine-specific demethylase 5D or JARID1D

**[[2yqe]] – hLSD5D ARID domain - NMR<br />

* Lysine-specific demethylase REF6 or Jmjd12

**[[6jnl]], [[6jnm]], [[6jnn]] – AtREF6 + DNA + AMP derivative – ''Arabidopsis thaliana''<br />

**[[6a58]], [[6a59]] – AtREF6 Ig g-1 chain + Zn<br />

**[[6a57]] – AtREF6 + DNA + Zn<br />

*Jmjd1b (Lysine-specific demethylase 2B; KDM2B)

**[[4o64]] – hJmj1b zinc finger domain + Zn <br />

**[[4c8d]], [[5fv3]] – hJmj1b catalytic domain + Mn + oxalylglycine <br />

**[[5fup]] – hJmj1b catalytic domain + Mn + Zn + oxoglutatate <br />

**[[5lwb]], [[5lw9]], [[5fzm]], [[5fzl]], [[5fzk]], [[5fzi]], [[5fzh]], [[5fzg]], [[5fzf]], [[5fze]], [[5fzd]], [[5fzc]], [[5fzb]], [[5fza]], [[5fz9]], [[5fz8]], [[5fz7]], [[5fz6]], [[5fz4]], [[5fz3]], [[5fz1]], [[5fz0]], [[5fyz]], [[5fyy]], [[5fyv]], [[5fyu]], [[5fyt]], [[5fyb]], [[5fy9]], [[5fy5]], [[5fy4]], [[5fun]], [[5fpu]], [[5fpl]], [[5a3w]], [[5a3t]], [[5a3p]], [[5a3n]] – hJmj1b catalytic domain + Mn + Zn + inhibitor <br />

**[[6bva]] – hJmj1b + S-phase kinase-associated protein + polyubiquitin <br />

**[[5jh5]] – hJmj1b + S-phase kinase-associated protein + polycomb protein + BCOR-like protein <br />

*Jmjd2b (Lysine-specific demethylase 4B)

**[[4lxl]] – hJmjd2b catalytic domain + Ni + histone H3 peptide with trimethyllysine <br />

**[[4uc4]] – hJmjd2b tudor domain <br />

*Jmjd2c (Lysine-specific demethylase 4C)

**[[2xdp]] – hJmjd2c tudor domain <br />

**[[2xml]], [[4xdo]] – hJmjd2c catalytic domain + Ni + oxalylglycine <br />

**[[4xdp]] – hJmjd2c catalytic domain + Fe <br />

**[[5fjh]], [[5fjk]] – hJmjd2c catalytic domain + Ni + inhibitor<br />

**[[5kr7]] – hJmjd2c catalytic domain + Fe + Zn + inhibitor<br />

*Jmjd2d (Lysine-specific demethylase 4D)

**[[3dxu]] – hJmjd2d catalytic domain + Fe + oxalylglycine <br />

**[[3dxt]], [[5pnw]], [[5pnv]], [[5pnu]], [[5pns]], [[5pnr]], [[5pnq]], [[5pnp]], [[5pno]], [[5pnn]], [[5pnm]], [[5pnl]], [[5pnk]], [[5pnj]], [[5pni]], [[5pnh]], [[5png]], [[5pnf]], [[5pne]], [[5pnd]], [[5pnc]], [[5pnb]], [[5pna]], [[5pn9]], [[5pn8]], [[5pn7]], [[5pn6]], [[5pn5]], [[5pn4]], [[5pn3]], [[5pn2]], [[5pn1]], [[5pn0]], [[5pmz]], [[5pmy]], [[5pmx]], [[5pmw]], [[5pmv]], [[5pmu]], [[5pmt]], [[5pms]], [[5pmr]], [[5pmq]], [[5pmp]], [[5pmo]], [[5pmn]], [[5pmm]], [[5pml]], [[5pmk]], [[5pmj]], [[5pmi]], [[5pmh]], [[5pmj]], [[5pmi]], [[5pmh]], [[5pmg]], [[5pmf]], [[5pme]], [[5pmd]], [[5pmc]], [[5pmb]], [[5pma]], [[5pm9]], [[5pm8]], [[5pm7]], [[5pm6]], [[5pm5]], [[5pm4]], [[5pm3]], [[5pm2]], [[5pm1]], [[5pm0]], [[5plz]], [[5ply]], [[5plx]], [[5plw]], [[5plv]], [[5plu]], [[5plt]], [[5pls]], [[5plr]], [[5plq]], [[5plp]], [[5plo]], [[5pln]], [[5plm]], [[5pll]], [[5plk]], [[5plj]], [[5pli]], [[5plh]], [[5plg]], [[5plf]], [[5ple]], [[5pld]], [[5plc]], [[5plb]], [[5pla]], [[5pl9]], [[5pl8]], [[5pl7]], [[5pl6]], [[5pl5]], [[5pl4]], [[5pl3]], [[5pl2]], [[5pl1]], [[5pl0]], [[5pkz]], [[5pky]], [[5pkx]], [[5pkw]], [[5pkv]], [[5pku]], [[5pkt]], [[5pks]], [[5pkr]], [[5pkq]], [[5pkp]], [[5pko]], [[5pkn]], [[5pkm]], [[5pkl]], [[5pkk]], [[5pkj]], [[5pki]], [[5pkh]], [[5pkg]], [[5pkf]], [[5pke]], [[5pkd]], [[5pkc]], [[5pkb]], [[5pka]], [[5pk9]], [[5pk8]], [[5pk7]], [[5pk6]], [[5pk5]], [[5pk4]], [[5pk3]], [[5pk2]], [[5pk1]], [[5pk0]], [[5pjz]], [[5pjy]], [[5pjx]], [[5pjw]], [[5pjv]], [[5pju]], [[5pjt]], [[5pjs]], [[5pjr]], [[5pjq]], [[5pjp]], [[5pjo]], [[5pjn]], [[5pjm]], [[5pjl]], [[5pjk]], [[5pjj]], [[5pji]], [[5pjh]], [[5pjg]], [[5pjf]], [[5pje]], [[5pjd]], [[5pjc]], [[5pjb]], [[5pja]], [[5pj9]], [[5pj8]], [[5pj7]], [[5pj6]], [[5pj5]], [[5pj4]], [[5pj3]], [[5pj2]], [[5pj1]], [[5pj0]], [[5piz]], [[5piy]], [[5pix]], [[5piw]], [[5piv]], [[5piu]], [[5pit]], [[5pis]], [[5pir]], [[5piq]], [[5pip]], [[5pio]], [[5pin]], [[5pim]], [[5pil]], [[5pik]], [[5pij]], [[5pii]], [[5pih]], [[5pig]], [[5pif]], [[5pie]], [[5pid]], [[5pic]], [[5pib]], [[5pia]], [[5pi9]], [[5pi8]], [[5pi7]], [[5pi6]], [[5pi5]], [[5pi4]], [[5pi3]], [[5pi2]], [[5pi1]], [[5pi0]], [[5phz]], [[5phy]], [[5phx]], [[5phw]], [[5phv]], [[5phu]], [[5pht]], [[5phs]], [[5phr]], [[5phq]], [[5php]], [[5pho]], [[5phn]], [[5phm]], [[5phl]], [[5phk]], [[5phj]], [[5phi]], [[5phh]], [[5phg]], [[5phf]], [[5phe]], [[5phd]], [[5phc]], [[5phb]], [[5pha]], [[5ph9]], [[5ph8]], [[5ph7]], [[5ph6]], [[5ph5]], [[5ph4]], [[5ph3]], [[5ph2]], [[5ph1]], [[5ph0]],

[[5pka]], [[5pk9]], [[5pk8]], [[5pk7]], [[5pk6]], [[5pk5]], [[5pk4]], [[5pk3]], [[5pk2]], [[5pk1]], [[5pk0]], [[5plj]], [[5pli]], [[5plh]], [[5plg]] – hJmjd2d catalytic domain + Zn<br />

**[[4hoo]] – hJmjd2d catalytic domain (mutant) + Ni<br />

**[[4d6q]], [[5f5a]], [[5f5c]], [[5f5i]] – hJmjd2d catalytic domain + Ni + inhibitor<br />

**[[6ete]], [[6etg]], [[6ets]], [[6ett]], [[6etu]], [[6etv]], [[6etw]] – hJmjd2d catalytic domain + Ni + Zn + inhibitor<br />

**[[5fp4]], [[5fp8]], [[5fp9]], [[5fpa]], [[5fpb]], [[5fp7]] – hJmjd2d catalytic domain + Fe + inhibitor<br />

**[[4d6r]], [[4d6s]] – hJmjd2d catalytic domain + Ni + inhibitor + oxalylglycine <br />

**[[4hon]] – hJmjd2d catalytic domain + Ni + histone H3 peptide with trimethyllysine + α-ketoglutarate <br />

*Jmjd3 (Lysine-specific demethylase 6B)

**[[2xxz]] – hJmjd3 catalytic domain + Ni <br />

**[[2xue]] – hJmjd3 catalytic domain + Fe + α-ketoglutarate <br />

**[[6f6d]], [[5oy3]] – hJmjd3 catalytic domain + Fe + Zn + α-ketoglutarate + histone peptide<br />

**[[4ask]] – hJmjd3 catalytic and Zinc finger domains + Co + inhibitor <br />

**[[4eyu]], [[4ez4]] – mJmjd3 C terminal + Ni + oxalylglycine - mouse <br />

**[[4ezh]] – mJmjd3 C terminal + Ni + histone H3 peptide with trimethyllysine + oxalylglycine <br />

**[[5fp3]] – hJmjd3 catalytic domain + inhibitor<br />

*Jmjd5 (Lysine-specific demethylase 8)

**[[6f4m]] – hJmjd5 catalytic domain <br />

**[[3uyj]], [[4qu1]] – hJmjd5 catalytic domain + Ni + α-ketoglutarate <br />

**[[4gjz]] – hJmjd5 catalytic domain + Co + α-ketoglutarate <br />

**[[6f4n]] – hJmjd5 catalytic domain + Mn + α-ketoglutarate <br />

**[[6f4o]] – hJmjd5 catalytic domain + Mn + succinate <br />

**[[4aap]] – hJmjd5 catalytic domain + Zn + oxalylglycine <br/ >

**[[6avs]] – hJmjd5 catalytic domain + Zn + NMMA <br/ >

**[[5fbj]], [[6ax3]] – hJmjd5 catalytic domain + Zn + oxoglutarate <br/ >

**[[4gjy]] – hJmjd5 catalytic domain + Co + oxalylglycine <br />

**[[4gaz]] – hJmjd5 catalytic domain + Ni + oxalylglycine <br />

**[[6f4p]] – hJmjd5 catalytic domain + Mn + oxalylglycine + RPS6<br />

**[[6f4q]] – hJmjd5 catalytic domain (mutant) + Mn + oxalylglycine + RPS6<br />

**[[6f4r]], [[6f4s]], [[6f4t]] – hJmjd5 catalytic domain (mutant) + Mn + oxalylglycine + RCCD1<br />

*Jmjd6

**[[3ld8]] – hJmjd6 catalytic domain + antibody + Fe <br />

**[[3ldb]] – hJmjd6 catalytic domain + antibody + Fe + α-ketoglutarate <br />

*Jmjd7

**[[4qu2]] – hJmjd7 catalytic domain + Ni + α-ketoglutarate <br />

**[[5nfn]] – hJmjd7 catalytic domain + Mn + oxoglutarate <br/ >

**[[3u78]] – hJmjd7 catalytic domain + Ni + oxoglutarate + inhibitor<br/ >

**[[5nfo]] – hJmjd7 catalytic domain (mutant) + Mn + oxoglutarate <br/ >

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