Sandbox GGC6
From Proteopedia
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| - | == | + | ==Your Heading Here (maybe something like 'Structure')== |
| - | <StructureSection load=' | + | <StructureSection load='1stp' size='340' side='right' caption='Caption for this structure' scene=''> |
| - | + | This is a default text for your page '''Sandbox GGC6'''. Click above on '''edit this page''' to modify. Be careful with the < and > signs. | |
| + | You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue. | ||
== Function == | == Function == | ||
| - | Its biochemical function is an Alpha-amylase activator that allows for the endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more alpha-(1->4)-linked D-glucose units. It also has a biological process of polysaccharide digestion which is a biochemical, chemical, and physical process that is carried out by living organisms to break down ingested polysaccharides into components that can be easily directed and absorbed into metabolism. | ||
== Disease == | == Disease == | ||
| - | + | ||
== Relevance == | == Relevance == | ||
| - | This is one type of major molecule that is used as an alternative anion which can induce some level of enzymatic activity despite very different atomic geometries, sizes, and polyatomic natures. The largest anion in this group ,nitrate, can comfortably fit in the chloride binding pocket making all necessary hydrogen bonds when using it as a modified enzyme. | ||
| - | Secondary structure of the 3BAJ shows the <scene name='78/781192/Secondary_structures/1'>alpha/beta helix</scene> | ||
| - | This is a view of the only <scene name='78/781192/Sidechain/1'>sidechain</scene> found in 3BAJ | ||
| - | The ligand shown is composed of NO3<scene name='78/781192/Ligand/1'>but there are a total of four ligands found in 3BAJ</scene> | ||
| - | The other ligands are NAG (N-acetyl-D-glucosamine), ARE (acarbose derived pentasaccharide), and a calcium ion | ||
| + | == Structural highlights == | ||
| + | |||
| + | This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes. | ||
| + | </StructureSection> | ||
== References == | == References == | ||
<references/> | <references/> | ||
Revision as of 22:26, 17 September 2019
Your Heading Here (maybe something like 'Structure')
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References
- ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
- ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
