6s8u
From Proteopedia
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- | '''Unreleased structure''' | ||
- | + | ==Structure of the PfEMP1 IT4var13 DBLbeta domain bound to ICAM-1== | |
+ | <StructureSection load='6s8u' size='340' side='right'caption='[[6s8u]], [[Resolution|resolution]] 3.67Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[6s8u]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human] and [http://en.wikipedia.org/wiki/Plafa Plafa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6S8U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6S8U FirstGlance]. <br> | ||
+ | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr> | ||
+ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ICAM1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6s8u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6s8u OCA], [http://pdbe.org/6s8u PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6s8u RCSB], [http://www.ebi.ac.uk/pdbsum/6s8u PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6s8u ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [[http://www.uniprot.org/uniprot/ICAM1_HUMAN ICAM1_HUMAN]] ICAM proteins are ligands for the leukocyte adhesion protein LFA-1 (integrin alpha-L/beta-2). During leukocyte trans-endothelial migration, ICAM1 engagement promotes the assembly of endothelial apical cups through ARHGEF26/SGEF and RHOG activation. In case of rhinovirus infection acts as a cellular receptor for the virus.<ref>PMID:2538243</ref> <ref>PMID:1968231</ref> <ref>PMID:11173916</ref> <ref>PMID:17875742</ref> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | A major determinant of pathogenicity in malaria caused by Plasmodium falciparum is the adhesion of parasite-infected erythrocytes to the vasculature or tissues of infected individuals. This occludes blood flow, leads to inflammation, and increases parasitemia by reducing spleen-mediated clearance of the parasite. This adhesion is mediated by PfEMP1, a multivariant family of around 60 proteins per parasite genome which interact with specific host receptors. One of the most common of these receptors is intracellular adhesion molecule-1 (ICAM-1), which is bound by 2 distinct groups of PfEMP1, A-type and B or C (BC)-type. Here, we present the structure of a domain from a B-type PfEMP1 bound to ICAM-1, revealing a complex binding site. Comparison with the existing structure of an A-type PfEMP1 bound to ICAM-1 shows that the 2 complexes share a globally similar architecture. However, while the A-type PfEMP1 bind ICAM-1 through a highly conserved binding surface, the BC-type PfEMP1 use a binding site that is more diverse in sequence, similar to how PfEMP1 interact with other human receptors. We also show that A- and BC-type PfEMP1 present ICAM-1 at different angles, perhaps influencing the ability of neighboring PfEMP1 domains to bind additional receptors. This illustrates the deep diversity of the PfEMP1 and demonstrates how variations in a single domain architecture can modulate binding to a specific ligand to control function and facilitate immune evasion. | ||
- | + | Structural insights into diverse modes of ICAM-1 binding by Plasmodium falciparum-infected erythrocytes.,Lennartz F, Smith C, Craig AG, Higgins MK Proc Natl Acad Sci U S A. 2019 Oct 1;116(40):20124-20134. doi:, 10.1073/pnas.1911900116. Epub 2019 Sep 16. PMID:31527263<ref>PMID:31527263</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
+ | <div class="pdbe-citations 6s8u" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
+ | [[Category: Human]] | ||
+ | [[Category: Large Structures]] | ||
+ | [[Category: Plafa]] | ||
+ | [[Category: Higgins, M K]] | ||
+ | [[Category: Lennartz, F]] | ||
+ | [[Category: Cell adhesion]] | ||
+ | [[Category: Cytoadhesion]] | ||
+ | [[Category: Icam-1]] | ||
+ | [[Category: Malaria]] | ||
+ | [[Category: Pfemp1]] |
Current revision
Structure of the PfEMP1 IT4var13 DBLbeta domain bound to ICAM-1
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Categories: Human | Large Structures | Plafa | Higgins, M K | Lennartz, F | Cell adhesion | Cytoadhesion | Icam-1 | Malaria | Pfemp1