6p42

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'''Unreleased structure'''
 
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The entry 6p42 is ON HOLD until Paper Publication
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==Yeast cytochrome c peroxidase (W191Y:L232H) in complex with iso-1 cytochrome c==
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<StructureSection load='6p42' size='340' side='right'caption='[[6p42]], [[Resolution|resolution]] 2.91&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6p42]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6P42 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6P42 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cytochrome-c_peroxidase Cytochrome-c peroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.5 1.11.1.5] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6p42 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6p42 OCA], [http://pdbe.org/6p42 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6p42 RCSB], [http://www.ebi.ac.uk/pdbsum/6p42 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6p42 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[[http://www.uniprot.org/uniprot/CCPR_YEAST CCPR_YEAST]] Destroys radicals which are normally produced within the cells and which are toxic to biological systems. [[http://www.uniprot.org/uniprot/CYC1_YEAST CYC1_YEAST]] Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Transient tyrosine and tryptophan radicals play key roles in the electron transfer (ET) reactions of photosystem (PS) II, ribonucleotide reductase (RNR), photolyase and many other proteins. However, Tyr and Trp are not functionally interchangeable and the factors controlling their reactivity are often unclear. Cytochrome c peroxidase (CcP) employs a Trp191(+*) radical to oxidize reduced cytochrome c (Cc). Although a Tyr191 replacement also forms a stable radical, it does not support rapid ET from Cc. Here we probe the redox properties of CcP Y191 by non-natural amino acid substitution, altering the ET driving force, and manipulating the protic environment of Y191. Higher potential fluorotyrosine residues increase ET rates marginally, but only addition of a hydrogen bond donor to Tyr191(*) (via Leu232His or Glu) rescues activity by increasing the ET rate by nearly 30-fold. ESR and ESEEM spectroscopies, crystallography, and pH-dependent ET kinetics provide strong evidence for hydrogen bond formation to Y191(*) by His232/Glu232. Rate measurements and rapid freeze quench ESR spectroscopy further reveal differences in radical propagation and Cc oxidation that support an increased Y191(*) reduction potential of approximately 200 mV in the presence of E232. Hence, Y191 inactivity results from a reduction potential drop owing to Y191(*+) deprotonation. Incorporation of a well-positioned base to accept and donate back a hydrogen bond upshifts the Tyr(*) potential into a range where it can effectively oxidize Cc. These findings have implications for the YZ/YD radicals of PS II, hole-hopping in RNR and cryptochrome, and engineering proteins for long-range ET reactions.
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Authors: Yee, E.F., Crane, B.R.
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Tuning radical relay residues by proton management rescues protein electron hopping.,Yee EF, Dzikovski B, Crane BR J Am Chem Soc. 2019 Oct 11. doi: 10.1021/jacs.9b05715. PMID:31603693<ref>PMID:31603693</ref>
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Description: Yeast cytochrome c peroxidase (W191Y:L232H) in complex with iso-1 cytochrome c
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Yee, E.F]]
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<div class="pdbe-citations 6p42" style="background-color:#fffaf0;"></div>
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[[Category: Crane, B.R]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Cytochrome-c peroxidase]]
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[[Category: Large Structures]]
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[[Category: Crane, B R]]
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[[Category: Yee, E F]]
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[[Category: Electron hopping]]
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[[Category: Electron transport]]
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[[Category: Electron transport-oxidoreductase complex]]
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[[Category: Heme protein]]
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[[Category: Multi-step tunneling]]

Revision as of 06:56, 23 October 2019

Yeast cytochrome c peroxidase (W191Y:L232H) in complex with iso-1 cytochrome c

PDB ID 6p42

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