6qii
From Proteopedia
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- | '''Unreleased structure''' | ||
- | + | ==Xenon derivatization of the F420-reducing [NiFe] hydrogenase complex from Methanosarcina barkeri== | |
+ | <StructureSection load='6qii' size='340' side='right'caption='[[6qii]], [[Resolution|resolution]] 2.28Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[6qii]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanosarcina_barkeri_ms Methanosarcina barkeri ms]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QII OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6QII FirstGlance]. <br> | ||
+ | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=144:TRIS-HYDROXYMETHYL-METHYL-AMMONIUM'>144</scene>, <scene name='pdbligand=BU3:(R,R)-2,3-BUTANEDIOL'>BU3</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NFU:FORMYL[BIS(HYDROCYANATO-1KAPPAC)]IRONNICKEL(FE-NI)'>NFU</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=XE:XENON'>XE</scene></td></tr> | ||
+ | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Coenzyme_F420_hydrogenase Coenzyme F420 hydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.12.98.1 1.12.98.1] </span></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6qii FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qii OCA], [http://pdbe.org/6qii PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6qii RCSB], [http://www.ebi.ac.uk/pdbsum/6qii PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6qii ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | [NiFe] hydrogenases are complex model enzymes for the reversible cleavage of dihydrogen (H 2 ). However, structural determinants of efficient H 2 binding to their [NiFe] active site are not properly understood. Here, we present crystallographic and vibrational spectroscopic insights into the unexplored structure of the H 2 -binding [NiFe] intermediate. Using an F 420 -reducing [NiFe]-hydrogenase from Methanosarcina barkeri as a model enzyme, we show that the protein backbone provides a strained chelating scaffold that tunes the [NiFe] active site for efficient H 2 binding and conversion. The protein matrix also directs H 2 diffusion to the [NiFe] site via two gas channels and allows the distribution of electrons between functional protomers through a subunit-bridging FeS cluster. Our findings emphasize the relevance of an atypical Ni coordination, thereby providing a blueprint for the design of bio-inspired H 2 conversion catalysts. | ||
- | + | X-ray Crystallography and Vibrational Spectroscopy Reveal Key Determinants of Biocatalytic Dihydrogen Cycling by [NiFe] hydrogenases.,Ilina Y, Lorent C, Katz S, Jeoung JH, Shima S, Horch M, Zebger I, Dobbek H Angew Chem Int Ed Engl. 2019 Oct 7. doi: 10.1002/anie.201908258. PMID:31591784<ref>PMID:31591784</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
+ | <div class="pdbe-citations 6qii" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
+ | [[Category: Coenzyme F420 hydrogenase]] | ||
+ | [[Category: Large Structures]] | ||
+ | [[Category: Methanosarcina barkeri ms]] | ||
[[Category: Dobbek, H]] | [[Category: Dobbek, H]] | ||
- | [[Category: Ilina, Y]] | ||
- | [[Category: Shima, S]] | ||
[[Category: Horch, M]] | [[Category: Horch, M]] | ||
- | [[Category: Jeoung, J | + | [[Category: Ilina, Y]] |
+ | [[Category: Jeoung, J H]] | ||
[[Category: Katz, S]] | [[Category: Katz, S]] | ||
- | [[Category: Zebger, I]] | ||
[[Category: Lorent, C]] | [[Category: Lorent, C]] | ||
+ | [[Category: Shima, S]] | ||
+ | [[Category: Zebger, I]] | ||
+ | [[Category: Methanogenic acetoclastic archaea]] | ||
+ | [[Category: Oxidoreductase]] | ||
+ | [[Category: Oxygen sensitive]] | ||
+ | [[Category: Reversible oxidation of dihydrogen]] |
Revision as of 07:01, 23 October 2019
Xenon derivatization of the F420-reducing [NiFe] hydrogenase complex from Methanosarcina barkeri
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