6kg2

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'''Unreleased structure'''
 
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The entry 6kg2 is ON HOLD until Paper Publication
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==Human MTHFD2 in complex with Compound 18==
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<StructureSection load='6kg2' size='340' side='right'caption='[[6kg2]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6kg2]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6KG2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6KG2 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=D8C:N-[2-chloranyl-4-[[7-methyl-8-(4-methylpiperazin-1-yl)-5-oxidanylidene-2,4-dihydro-1H-chromeno[3,4-c]pyridin-3-yl]carbonyl]phenyl]methanesulfonamide'>D8C</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6kg2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6kg2 OCA], [http://pdbe.org/6kg2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6kg2 RCSB], [http://www.ebi.ac.uk/pdbsum/6kg2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6kg2 ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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We report the discovery of a potent and isozyme-selective MTHFD2 inhibitor, DS18561882 (2). Through investigation of the substituents on our tricyclic coumarin scaffold (1,2,3,4-tetrahydrochromeno[3,4-c]pyridin-5-one), MTHFD2 inhibitory activity was shown to be elevated by incorporating an amine moiety at the 8-position and a methyl group at the 7-position of the initial lead 1. X-ray structure analysis revealed that a key interaction for enhanced potency was salt bridge formation between the amine moiety and the diphosphate linker of an NAD+ cofactor. Furthermore, ortho-substituted sulfonamide in place of benzoic acid of 1 significantly improved cell permeability and cell-based growth inhibition against a human breast cancer cell line. The thus-optimized DS18561882 showed the strongest cell-based activity (GI50 = 140 nM) in the class, a good oral pharmacokinetic profile, and thereby tumor growth inhibition in a mouse xenograft model upon oral administration.
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Authors: Suzuki, M., Matsui, Y., Ota, M., Kawai, J.
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Discovery of a Potent, Selective, and Orally Available MTHFD2 Inhibitor (DS18561882) with In Vivo Anti-Tumor Activity.,Kawai J, Toki T, Ota M, Inoue H, Takata Y, Asahi T, Suzuki M, Shimada T, Ono K, Suzuki K, Takaishi S, Ohki H, Matsui S, Tsutsumi S, Hirota Y, Nakayama K J Med Chem. 2019 Oct 22. doi: 10.1021/acs.jmedchem.9b01113. PMID:31638799<ref>PMID:31638799</ref>
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Description: Human MTHFD2 in complex with Compound 18
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Ota, M]]
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<div class="pdbe-citations 6kg2" style="background-color:#fffaf0;"></div>
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[[Category: Suzuki, M]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
[[Category: Kawai, J]]
[[Category: Kawai, J]]
[[Category: Matsui, Y]]
[[Category: Matsui, Y]]
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[[Category: Ota, M]]
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[[Category: Suzuki, M]]
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[[Category: Cofactor]]
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[[Category: Dehydrogenase]]
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[[Category: Folate]]
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[[Category: Inhibitor]]
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[[Category: Oxidoreductase]]

Revision as of 11:00, 13 November 2019

Human MTHFD2 in complex with Compound 18

PDB ID 6kg2

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