6oxd

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'''Unreleased structure'''
 
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The entry 6oxd is ON HOLD until Paper Publication
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==Structure of Mycobacterium tuberculosis methylmalonyl-CoA mutase with adenosyl cobalamin==
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<StructureSection load='6oxd' size='340' side='right'caption='[[6oxd]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6oxd]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6OXD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6OXD FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=5AD:5-DEOXYADENOSINE'>5AD</scene>, <scene name='pdbligand=B12:COBALAMIN'>B12</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=NJS:Itaconyl+coenzyme+A'>NJS</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6oxc|6oxc]]</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Methylmalonyl-CoA_mutase Methylmalonyl-CoA mutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.4.99.2 5.4.99.2] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6oxd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6oxd OCA], [http://pdbe.org/6oxd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6oxd RCSB], [http://www.ebi.ac.uk/pdbsum/6oxd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6oxd ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Itaconate is an immunometabolite with both anti-inflammatory and bactericidal effects. Its coenzyme A (CoA) derivative, itaconyl-CoA, inhibits B12-dependent methylmalonyl-CoA mutase (MCM) by an unknown mechanism. We demonstrate that itaconyl-CoA is a suicide inactivator of human and Mycobacterium tuberculosis MCM, which forms a markedly air-stable biradical adduct with the 5'-deoxyadenosyl moiety of the B12 coenzyme. Termination of the catalytic cycle in this way impairs communication between MCM and its auxiliary repair proteins. Crystallography and spectroscopy of the inhibited enzyme are consistent with a metal-centered cobalt radical ~6 angstroms away from the tertiary carbon-centered radical and suggest a means of controlling radical trajectories during MCM catalysis. Mycobacterial MCM thus joins enzymes in the glyoxylate shunt and the methylcitrate cycle as targets of itaconate in pathogen propionate metabolism.
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Authors:
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Itaconyl-CoA forms a stable biradical in methylmalonyl-CoA mutase and derails its activity and repair.,Ruetz M, Campanello GC, Purchal M, Shen H, McDevitt L, Gouda H, Wakabayashi S, Zhu J, Rubin EJ, Warncke K, Mootha VK, Koutmos M, Banerjee R Science. 2019 Nov 1;366(6465):589-593. doi: 10.1126/science.aay0934. PMID:31672889<ref>PMID:31672889</ref>
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Description:
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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<div class="pdbe-citations 6oxd" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Methylmalonyl-CoA mutase]]
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[[Category: Banerjee, R]]
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[[Category: Koutmos, M]]
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[[Category: Purchal, M]]
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[[Category: Ruetz, M]]
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[[Category: B12]]
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[[Category: Cobalamin]]
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[[Category: Cobalt]]
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[[Category: Disease mutation]]
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[[Category: Immunometabolite]]
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[[Category: Isomerase]]
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[[Category: Itaconyl coa]]
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[[Category: Metabolic disease]]
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[[Category: Metal-binding]]
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[[Category: Methylmalonic aciduria]]
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[[Category: Methylmalonyl coa mutase]]
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[[Category: Methylmalonyl coa mutase deficiency]]
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[[Category: Mycobacterium tuberculosis]]
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[[Category: Radical]]

Revision as of 11:06, 13 November 2019

Structure of Mycobacterium tuberculosis methylmalonyl-CoA mutase with adenosyl cobalamin

PDB ID 6oxd

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