5yov

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
==Crystal structure of BRD4-BD1 bound with hjp126==
==Crystal structure of BRD4-BD1 bound with hjp126==
-
<StructureSection load='5yov' size='340' side='right' caption='[[5yov]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
+
<StructureSection load='5yov' size='340' side='right'caption='[[5yov]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5yov]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YOV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YOV FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5yov]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YOV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YOV FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=8XR:(3~{R})-4-cyclopentyl-~{N}-(2,4-dimethylphenyl)-1,3-dimethyl-2-oxidanylidene-3~{H}-quinoxaline-6-carboxamide'>8XR</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=8XR:(3~{R})-4-cyclopentyl-~{N}-(2,4-dimethylphenyl)-1,3-dimethyl-2-oxidanylidene-3~{H}-quinoxaline-6-carboxamide'>8XR</scene></td></tr>
 +
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BRD4, HUNK1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yov FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yov OCA], [http://pdbe.org/5yov PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yov RCSB], [http://www.ebi.ac.uk/pdbsum/5yov PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yov ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yov FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yov OCA], [http://pdbe.org/5yov PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yov RCSB], [http://www.ebi.ac.uk/pdbsum/5yov PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yov ProSAT]</span></td></tr>
</table>
</table>
Line 11: Line 12:
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/BRD4_HUMAN BRD4_HUMAN]] Plays a role in a process governing chromosomal dynamics during mitosis (By similarity).
[[http://www.uniprot.org/uniprot/BRD4_HUMAN BRD4_HUMAN]] Plays a role in a process governing chromosomal dynamics during mitosis (By similarity).
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Recently, several kinase inhibitors were found to also inhibit bromodomains, providing a new strategy for the discovery of bromodomain inhibitors. Along this line, starting from PLK1-BRD4 dual inhibitor BI-2536, we discovered a new series of dihydroquinoxalin-2(1H)-one with aniline and indoline WPF binders as selective BRD4 inhibitors. They showed better BRD4-BD1 potency and negligible PLK1 kinase activity comparing with BI-2536. Additionally, dihydroquinoxalin-2(1H)-ones containing indoline group showed profound activities in molecular and cellular based assays. Throughout the study, compounds 9, 28 and 37 showed significant inhibitory activity for c-Myc or PD-L1 protein expression and mRNA transcription both at concentration of 0.2 and 1muM. Compound 9 was found possessing the best balance of binding affinity, in vitro metabolic stability and in vivo pharmacokinetic properties. Therefore, it was selected for in vivo pharmacological study. By using MM.1S cell derived xenograft model, we confirmed compound 9 showed comparable in vivo tumor inhibition to phase II investigation drug I-BET762, which, together with the novel WPF binder, further indicated the utility of this series of BRD4 inhibitors.
 +
 +
Structure-based optimization of a series of selective BET inhibitors containing aniline or indoline groups.,Hu J, Wang Y, Li Y, Cao D, Xu L, Song S, Damaneh MS, Li J, Chen Y, Wang X, Chen L, Shen J, Miao Z, Xiong B Eur J Med Chem. 2018 Apr 25;150:156-175. doi: 10.1016/j.ejmech.2018.02.070. Epub , 2018 Feb 24. PMID:29525435<ref>PMID:29525435</ref>
 +
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 5yov" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Bromodomain-containing protein 3D structures|Bromodomain-containing protein 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bing, X]]
+
[[Category: Human]]
-
[[Category: Danyan, C]]
+
[[Category: Large Structures]]
-
[[Category: Jianping, H]]
+
[[Category: Cao, D]]
-
[[Category: Yanlian, L]]
+
[[Category: Hu, J]]
 +
[[Category: Li, Y]]
 +
[[Category: Xiong, B]]
[[Category: Bromodomain]]
[[Category: Bromodomain]]
[[Category: Transcription-inhibitor complex]]
[[Category: Transcription-inhibitor complex]]

Revision as of 17:05, 20 November 2019

Crystal structure of BRD4-BD1 bound with hjp126

PDB ID 5yov

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools