This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
5uuh
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
==Bacillus cereus DNA glycosylase AlkD bound to a yatakemycin-adenine nucleobase adduct and DNA containing a fluorinated abasic site (9-mer product complex)== | ==Bacillus cereus DNA glycosylase AlkD bound to a yatakemycin-adenine nucleobase adduct and DNA containing a fluorinated abasic site (9-mer product complex)== | ||
| - | <StructureSection load='5uuh' size='340' side='right' caption='[[5uuh]], [[Resolution|resolution]] 1.57Å' scene=''> | + | <StructureSection load='5uuh' size='340' side='right'caption='[[5uuh]], [[Resolution|resolution]] 1.57Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[5uuh]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5UUH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5UUH FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5uuh]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_14579 Atcc 14579]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5UUH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5UUH FirstGlance]. <br> |
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=YTA:yatakemycin-adenine+nucleobase+adduct'>YTA</scene>, <scene name='pdbligand=RF5:2-DEOXY-2-FLUORO-5-O-PHOSPHONO-ALPHA-D-ARABINOFURANOSE'>RF5</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=YTA:yatakemycin-adenine+nucleobase+adduct'>YTA</scene>, <scene name='pdbligand=RF5:2-DEOXY-2-FLUORO-5-O-PHOSPHONO-ALPHA-D-ARABINOFURANOSE'>RF5</scene></td></tr> | ||
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5uuf|5uuf]], [[5uug|5uug]], [[5uuj|5uuj]]</td></tr> | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5uuf|5uuf]], [[5uug|5uug]], [[5uuj|5uuj]]</td></tr> | ||
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">bcere0015_46090 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1396 ATCC 14579])</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5uuh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5uuh OCA], [http://pdbe.org/5uuh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5uuh RCSB], [http://www.ebi.ac.uk/pdbsum/5uuh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5uuh ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5uuh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5uuh OCA], [http://pdbe.org/5uuh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5uuh RCSB], [http://www.ebi.ac.uk/pdbsum/5uuh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5uuh ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| Line 17: | Line 18: | ||
</div> | </div> | ||
<div class="pdbe-citations 5uuh" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 5uuh" style="background-color:#fffaf0;"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[DNA glycosylase 3D structures|DNA glycosylase 3D structures]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Atcc 14579]] | ||
| + | [[Category: Large Structures]] | ||
[[Category: Eichman, B F]] | [[Category: Eichman, B F]] | ||
[[Category: Mullins, E A]] | [[Category: Mullins, E A]] | ||
Revision as of 08:00, 27 November 2019
Bacillus cereus DNA glycosylase AlkD bound to a yatakemycin-adenine nucleobase adduct and DNA containing a fluorinated abasic site (9-mer product complex)
| |||||||||||
