Sandbox Reserved 1556
From Proteopedia
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GfTNMT was co-crystallized with the cofactor S-adenosyl-L-methionine (dmin = 1.6 A), product S-adenosyl-L-homocysteine (dmin = 1.8 A), or in complex with S-adenosyl-L-homocysteine and (S)-cis-N-methylstylopine (dmin = 1.8 A), These structures reveal for the first time how a mostly <scene name='82/823080/Hydrophobicity/1'>hydrophobic</scene> L-shaped substrate recognition pocket selects for the (S)-cis configuration of the two central six-membered rings in protoberberine BIA compounds. The substrate specificity of TNMT enzymes appears to arise from the <scene name='82/823080/Secondary_structures/1'>arrangement</scene> of subgroup-specific stereospecific recognition elements relative to catalytic elements that are more widely conserved among all BIA NMTs. It's catalytic triad consists of His-208, Glu-204, and Glu-207. The <scene name='82/823080/Active_site/1'>active site</scene>... The <scene name='82/823080/Ligand_focused/1'>ligand</scene>... The binding mode of protoberberine compounds to GfTNMT appears to be similar to coclaurine NMT, with the isoquinoline rings buried deepest in the binding pocket. This binding mode differs from that of pavine NMT, in which the benzyl ring is bound more deeply than the isoquinoline rings. The insights into <scene name='82/823080/Aromatic/1'>substrate recognition</scene> and catalysis provided here form a sound basis for the rational engineering of <scene name='82/823080/Helix/1'>NMT enzymes</scene> for chemoenzymatic synthesis and metabolic engineering. | GfTNMT was co-crystallized with the cofactor S-adenosyl-L-methionine (dmin = 1.6 A), product S-adenosyl-L-homocysteine (dmin = 1.8 A), or in complex with S-adenosyl-L-homocysteine and (S)-cis-N-methylstylopine (dmin = 1.8 A), These structures reveal for the first time how a mostly <scene name='82/823080/Hydrophobicity/1'>hydrophobic</scene> L-shaped substrate recognition pocket selects for the (S)-cis configuration of the two central six-membered rings in protoberberine BIA compounds. The substrate specificity of TNMT enzymes appears to arise from the <scene name='82/823080/Secondary_structures/1'>arrangement</scene> of subgroup-specific stereospecific recognition elements relative to catalytic elements that are more widely conserved among all BIA NMTs. It's catalytic triad consists of His-208, Glu-204, and Glu-207. The <scene name='82/823080/Active_site/1'>active site</scene>... The <scene name='82/823080/Ligand_focused/1'>ligand</scene>... The binding mode of protoberberine compounds to GfTNMT appears to be similar to coclaurine NMT, with the isoquinoline rings buried deepest in the binding pocket. This binding mode differs from that of pavine NMT, in which the benzyl ring is bound more deeply than the isoquinoline rings. The insights into <scene name='82/823080/Aromatic/1'>substrate recognition</scene> and catalysis provided here form a sound basis for the rational engineering of <scene name='82/823080/Helix/1'>NMT enzymes</scene> for chemoenzymatic synthesis and metabolic engineering. | ||
== Energy Transformation == | == Energy Transformation == | ||
- | + | The enzyme has a pH optimum of 8.9, a temperature optimum at 40° and a Mr of about 78 000 ± 10%. The Km for (S)-canadine was determined to be 6.4,μM, for (S)-stylopine 3.1 μM and for SAM 12,μM. The enzyme is inhibited by S-adenosyl-l-homocysteine (SAH with a Ki of 24 μM. | |
This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes. | This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes. | ||
Revision as of 05:20, 1 December 2019
This Sandbox is Reserved from Aug 26 through Dec 12, 2019 for use in the course CHEM 351 Biochemistry taught by Bonnie_Hall at the Grand View University, Des Moines, USA. This reservation includes Sandbox Reserved 1556 through Sandbox Reserved 1575. |
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Tetrahydroprotoberberine N-methyltransferase
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References
- ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
- ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644