5u6k

From Proteopedia

(Difference between revisions)

Revision as of 09:28, 4 December 2019

Crystal structure of TopBP1 BRCT4/5 in complex with a BLM phosphopeptide

Structural highlights

5u6k is a 12 chain structure with sequence from Lk3 transgenic mice. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
NonStd Res:
Gene:	Topbp1, Kiaa0259 (LK3 transgenic mice)
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[TOPB1_MOUSE] Required for DNA replication (By similarity). Plays a role in the rescue of stalled replication forks and checkpoint control (PubMed:14718568). Binds double-stranded DNA breaks and nicks as well as single-stranded DNA (By similarity). Recruits the SWI/SNF chromatin remodeling complex to E2F1-responsive promoters. Down-regulates E2F1 activity and inhibits E2F1-dependent apoptosis during G1/S transition and after DNA damage (By similarity). Induces a large increase in the kinase activity of ATR (By similarity).[UniProtKB:Q92547]^[1]

Publication Abstract from PubMed

Topoisomerase IIbeta binding protein 1 (TopBP1) is a critical protein-protein interaction hub in DNA replication checkpoint control. It was proposed that TopBP1 BRCT5 interacts with Bloom syndrome helicase (BLM) to regulate genome stability through either phospho-Ser304 or phospho-Ser338 of BLM. Here we show that TopBP1 BRCT5 specifically interacts with the BLM region surrounding pSer304, not pSer338. Our crystal structure of TopBP1 BRCT4/5 bound to BLM reveals recognition of pSer304 by a conserved pSer-binding pocket, and interactions between an FVPP motif N-terminal to pSer304 and a hydrophobic groove on BRCT5. This interaction utilizes the same surface of BRCT5 that recognizes the DNA damage mediator, MDC1; however the binding orientations of MDC1 and BLM are reversed. While the MDC1 interactions are largely electrostatic, the interaction with BLM has higher affinity and relies on a mix of electrostatics and hydrophobicity. We suggest that similar evolutionarily conserved interactions may govern interactions between TopBP1 and 53BP1.

Structural Insight into BLM Recognition by TopBP1.,Sun L, Huang Y, Edwards RA, Yang S, Blackford AN, Niedzwiedz W, Glover JNM Structure. 2017 Sep 1. pii: S0969-2126(17)30258-7. doi:, 10.1016/j.str.2017.08.005. PMID:28919440^[2]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Perera D, Perez-Hidalgo L, Moens PB, Reini K, Lakin N, Syvaoja JE, San-Segundo PA, Freire R. TopBP1 and ATR colocalization at meiotic chromosomes: role of TopBP1/Cut5 in the meiotic recombination checkpoint. Mol Biol Cell. 2004 Apr;15(4):1568-79. Epub 2004 Jan 12. PMID:14718568 doi:http://dx.doi.org/10.1091/mbc.E03-06-0444
↑ Sun L, Huang Y, Edwards RA, Yang S, Blackford AN, Niedzwiedz W, Glover JNM. Structural Insight into BLM Recognition by TopBP1. Structure. 2017 Sep 1. pii: S0969-2126(17)30258-7. doi:, 10.1016/j.str.2017.08.005. PMID:28919440 doi:http://dx.doi.org/10.1016/j.str.2017.08.005

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 See Also
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5u6k"

@@ Line 1: / Line 1: @@
 ==Crystal structure of TopBP1 BRCT4/5 in complex with a BLM phosphopeptide==
-<StructureSection load='5u6k' size='340' side='right' caption='[[5u6k]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
+<StructureSection load='5u6k' size='340' side='right'caption='[[5u6k]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5u6k]] is a 12 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5U6K OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5U6K FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5u6k]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5U6K OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5U6K FirstGlance]. <br>
 </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=SEP:PHOSPHOSERINE'>SEP</scene></td></tr>
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Topbp1, Kiaa0259 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr>
 <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5u6k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5u6k OCA], [http://pdbe.org/5u6k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5u6k RCSB], [http://www.ebi.ac.uk/pdbsum/5u6k PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5u6k ProSAT]</span></td></tr>
 </table>
@@ Line 25: / Line 26: @@
 __TOC__
 </StructureSection>
+[[Category: Large Structures]]
+[[Category: Lk3 transgenic mice]]
 [[Category: Edwards, R A]]
 [[Category: Glover, J N.M]]

5u6k

From Proteopedia

Revision as of 09:28, 4 December 2019

Crystal structure of TopBP1 BRCT4/5 in complex with a BLM phosphopeptide

Structural highlights

Function

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

Personal tools

Navigation

Search

Toolbox