Ribosome biogenesis protein

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*Ribosome biogenesis protein
*Ribosome biogenesis protein
 +
**[[6n31]] – hWdr12 residues 90-422 – human <br />
 +
**[[6p0q]] – hWdr12 ubiquitin-like domain 1-87 <br />
**[[4u7a]] – yErb1 – yeast <br />
**[[4u7a]] – yErb1 – yeast <br />
**[[5iw7]], [[5wwn]] – yTsr1 <br />
**[[5iw7]], [[5wwn]] – yTsr1 <br />
Line 38: Line 40:
*Ribosome biogenesis protein complex
*Ribosome biogenesis protein complex
 +
**[[6eml]], [[6fai]] – yTsr1 + 40S ribosome - Cryo EM <br />
 +
**[[5tzs]], [[5wyj]], [[5wyk]] – yBms1 + 40S ribosome - Cryo EM <br />
 +
**[[5wxl]], [[5a53]] – yRpf2 + regulator of ribosome biosynthesis <br />
 +
**[[4clq]] – yBms1 + Rcl1P <br />
 +
**[[4wjv]] – yNsa2 + ribosome assembly protein 4 + MBP<br />
 +
**[[5z3g]] – yNop53 + 60S ribosome - Cryo EM <br />
 +
**[[5ooq]] – yNop53 + ATP-dependent RNA helicase Dob1 <br />
 +
**[[5ydt]] – yUtp30 + RNA – Cryo EM<br />
 +
**[[4clq]] – yBms1 + Rcl1P <br />
 +
**[[6cb1]], [[6em4]], [[6em5]], [[6em3]], [[6c0f]], [[6elz]], [[6em1]], [[5z3g]] – yNsa1 + 60S ribosome - Cryo EM <br />
 +
**[[5ydt]] – yUtp30 + RNA – Cryo EM<br />
 +
**[[5cxb]], [[5cxc]], [[5cyk]], [[5em2]] – CtYtm1 + Erb1 C-terminal – ''Chaetomium thermophilum''<br />
 +
**[[6qtb]] – CtYtm1 + midasin<br />
**[[3bbh]] – MjNep1 + sinefungin<br />
**[[3bbh]] – MjNep1 + sinefungin<br />
**[[3bbd]] – MjNep1 + SAH<br />
**[[3bbd]] – MjNep1 + SAH<br />
**[[2apo]] – MjNop10 + pseudouridine synthase <br />
**[[2apo]] – MjNop10 + pseudouridine synthase <br />
-
**[[5wxl]], [[5a53]] – yRpf2 + regulator of ribosome biosynthesis <br />
+
**[[6ppk]] – Tsr1 in 50S subunit – ''Bacillus subtilis'' - Cryo EM<br />
**[[2aus]] – Nop10 + pseudouridine synthase – ''Pyrococcus abyssi'' <br />
**[[2aus]] – Nop10 + pseudouridine synthase – ''Pyrococcus abyssi'' <br />
**[[2ey4]] – PfNop10 + pseudouridine synthase + GAR1 – ''Pyrococcus furiosus'' <br />
**[[2ey4]] – PfNop10 + pseudouridine synthase + GAR1 – ''Pyrococcus furiosus'' <br />
Line 48: Line 63:
**[[2hvy]], [[3hay]] – PfNop10 + pseudouridine synthase + RNA + GAR1 + ribosomal protein L7AE<br />
**[[2hvy]], [[3hay]] – PfNop10 + pseudouridine synthase + RNA + GAR1 + ribosomal protein L7AE<br />
**[[3hjw]], [[3lwo]], [[3lwq]], [[3lwr]], [[3lwv]], [[3lwp]], [[3hax]] – PfNop10 + pseudouridine synthase + RNA + ribosomal protein L7AE<br />
**[[3hjw]], [[3lwo]], [[3lwq]], [[3lwr]], [[3lwv]], [[3lwp]], [[3hax]] – PfNop10 + pseudouridine synthase + RNA + ribosomal protein L7AE<br />
-
**[[4clq]] – yBms1 + Rcl1P <br />
+
 
-
**[[6cb1]], [[6em4]], [[6em5]], [[6em3]], [[6c0f]], [[6elz]], [[6em1]], [[5z3g]] – yNsa1 + 60S ribosome - Cryo EM <br />
+
-
**[[4wjv]] – yNsa2 + ribosome assembly protein 4 + MBP<br />
+
-
**[[5z1g]] – yBrx1 + RRNA-procesing protein<br />
+
-
**[[5ooq]] – yNop53 + ATP-dependent RNA helicase Dob1 <br />
+
-
**[[5z3g]] – yNop53 + 60S ribosome - Cryo EM <br />
+
-
**[[5tzs]], [[5wyj]], [[5wyk]] – yBms1 + 40S ribosome - Cryo EM <br />
+
-
**[[6eml]], [[6fai]] – yTsr1 + 40S ribosome - Cryo EM <br />
+
-
**[[5ydt]] – yUtp30 + RNA – Cryo EM<br />
+
-
**[[5cxb]], [[5cxc]], [[5cyk]], [[5em2]] – Ytm1 + Erb1 C-terminal – ''Chaetomium thermophilum''<br />
+
}}
}}
== References ==
== References ==

Revision as of 09:06, 24 December 2019

Ribosome biogenesis protein (PDB code 3hay)

Drag the structure with the mouse to rotate

3D Structures of ribosome biogenesis protein

Updated on 24-December-2019

References

  1. ↑ Marcin W, Neira JL, Bravo J. The Carboxy-Terminal Domain of Erb1 Is a Seven-Bladed ss-Propeller that Binds RNA. PLoS One. 2015 Apr 16;10(4):e0123463. doi: 10.1371/journal.pone.0123463., eCollection 2015. PMID:25880847 doi:http://dx.doi.org/10.1371/journal.pone.0123463
  2. ↑ Hamma T, Reichow SL, Varani G, Ferre-D'Amare AR. The Cbf5-Nop10 complex is a molecular bracket that organizes box H/ACA RNPs. Nat Struct Mol Biol. 2005 Dec;12(12):1101-7. Epub 2005 Nov 15. PMID:16286935 doi:10.1038/nsmb1036
  3. ↑ Hu J, Zhu X, Ye K. Structure and RNA recognition of ribosome assembly factor Utp30. RNA. 2017 Sep 26. pii: rna.062695.117. doi: 10.1261/rna.062695.117. PMID:28951391 doi:http://dx.doi.org/10.1261/rna.062695.117
  4. ↑ McCaughan UM, Jayachandran U, Shchepachev V, Chen ZA, Rappsilber J, Tollervey D, Cook AG. Pre-40S ribosome biogenesis factor Tsr1 is an inactive structural mimic of translational GTPases. Nat Commun. 2016 Jun 2;7:11789. doi: 10.1038/ncomms11789. PMID:27250689 doi:http://dx.doi.org/10.1038/ncomms11789
  5. ↑ Taylor AB, Meyer B, Leal BZ, Kotter P, Schirf V, Demeler B, Hart PJ, Entian KD, Wohnert J. The crystal structure of Nep1 reveals an extended SPOUT-class methyltransferase fold and a pre-organized SAM-binding site. Nucleic Acids Res. 2008 Mar;36(5):1542-54. Epub 2008 Jan 21. PMID:18208838 doi:10.1093/nar/gkm1172
  6. ↑ Delprato A, Al Kadri Y, Perebaskine N, Monfoulet C, Henry Y, Henras AK, Fribourg S. Crucial role of the Rcl1p-Bms1p interaction for yeast pre-ribosomal RNA processing. Nucleic Acids Res. 2014;42(15):10161-72. doi: 10.1093/nar/gku682. Epub 2014 Jul, 26. PMID:25064857 doi:http://dx.doi.org/10.1093/nar/gku682
  7. ↑ Liang B, Zhou J, Kahen E, Terns RM, Terns MP, Li H. Structure of a functional ribonucleoprotein pseudouridine synthase bound to a substrate RNA. Nat Struct Mol Biol. 2009 Jul;16(7):740-6. Epub 2009 May 28. PMID:19478803 doi:10.1038/nsmb.1624

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