This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
4yif
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
==Crystal structure of Rv0880== | ==Crystal structure of Rv0880== | ||
| - | <StructureSection load='4yif' size='340' side='right' caption='[[4yif]], [[Resolution|resolution]] 2.00Å' scene=''> | + | <StructureSection load='4yif' size='340' side='right'caption='[[4yif]], [[Resolution|resolution]] 2.00Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[4yif]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YIF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YIF FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4yif]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Myctu Myctu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YIF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YIF FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yif FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yif OCA], [http://pdbe.org/4yif PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4yif RCSB], [http://www.ebi.ac.uk/pdbsum/4yif PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4yif ProSAT]</span></td></tr> | + | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Rv0880, MTCY31.08 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83332 MYCTU])</td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yif FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yif OCA], [http://pdbe.org/4yif PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4yif RCSB], [http://www.ebi.ac.uk/pdbsum/4yif PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4yif ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Rv0880 from the pathogen Mycobacterium tuberculosis is classified as a MarR family protein in the Pfam database. It consists of 143 amino acids and has an isoelectric point of 10.9. Crystals of Rv0880 belonged to space group P1, with unit-cell parameters a = 54.97, b = 69.60, c = 70.32 A, alpha = 103.71, beta = 111.06, gamma = 105.83 degrees . The structure of the MarR family transcription regulator Rv0880 was solved at a resolution of 2.0 A with an R(cryst) and R(free) of 21.2 and 24.9%, respectively. The dimeric structure resembles that of other MarR proteins, with each subunit comprising a winged helix-turn-helix domain connected to an alpha-helical dimerization domain. | ||
| + | |||
| + | Structure of the MarR family protein Rv0880 from Mycobacterium tuberculosis.,Gao YR, Feng N, Chen T, Li de F, Bi LJ Acta Crystallogr F Struct Biol Commun. 2015 Jun;71(Pt 6):741-5. doi:, 10.1107/S2053230X15007281. Epub 2015 May 22. PMID:26057805<ref>PMID:26057805</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 4yif" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Myctu]] | ||
[[Category: Bi, L J]] | [[Category: Bi, L J]] | ||
[[Category: Feng, N]] | [[Category: Feng, N]] | ||
Revision as of 10:49, 25 December 2019
Crystal structure of Rv0880
| |||||||||||
