Sandbox Reserved 1100

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The Adiponectin receptor 1 is an integral membrane protein composed of 375 amino acids and its molecular weight is 42,4 kDa. This protein contains an internal <scene name='82/829353/N-terminus_domain/1'>N-terminus domain</scene> (residues 89 to 120), a short intracellular domain called <scene name='82/829353/Helice0/1'>helix 0</scene> (residues 121 to 129), <scene name='82/829353/7tm/1'>seven transmembrane helices</scene> (residues 134 to 364) and an external <scene name='82/829353/C-terminus_domain/1'>C-terminus domain</scene> (residues 365 to 375).
The Adiponectin receptor 1 is an integral membrane protein composed of 375 amino acids and its molecular weight is 42,4 kDa. This protein contains an internal <scene name='82/829353/N-terminus_domain/1'>N-terminus domain</scene> (residues 89 to 120), a short intracellular domain called <scene name='82/829353/Helice0/1'>helix 0</scene> (residues 121 to 129), <scene name='82/829353/7tm/1'>seven transmembrane helices</scene> (residues 134 to 364) and an external <scene name='82/829353/C-terminus_domain/1'>C-terminus domain</scene> (residues 365 to 375).
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The organisation of the structure of the Adiponectin receptor 1 is the opposite [[G-protein coupled receptor]] family. Indeed, the Adiponectin receptor has an internal N-terminus domain and an external C-terminus domain while the G-protein family has an internal N-terminus domain and an external C-terminus domain.
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The organisation of the structure of the Adiponectin receptor 1 is the opposite to [[G protein-coupled receptor]] family. Indeed, the Adiponectin receptor has an internal <scene name='82/829353/N-terminus_domain/1'>N-terminus domain</scene> and an external <scene name='82/829353/C-terminus_domain/1'>C-terminus domain</scene> domain while the G-protein family has an internal N-terminus domain and an external C-terminus domain.
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The Adiponectin receptor 1 contains seven transmembrane helices linked thanks to three extracellular loops and three intracellular loops. The helix I (color= deepskybleu) is formed by the residues 135 to 157, helix II (color=seagreen) by the residues 169 to 192, the helix III (color=fushia) by the residues 198 to 227, the helix IV (color=grey)by the residues 232 to 252, the helix V(color=orangered) by the residues 264 to 288 the helix VI(color=blue) by the residues 305 to 319 and the helix VII (color = coral)by the residues 336 to 364.Besides, the helices III and VI are longer than the other helices. These seven transmembrane helices have a clockwise circular specific organisation (from helix I to helix VII) and form a bundle.
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The Adiponectin receptor 1 contains <scene name='82/829353/7tm/1'>seven transmembrane helices</scene> linked thanks to three extracellular loops and three intracellular loops. The helix I (color= deepskybleu) is formed by the residues 135 to 157, helix II (color=seagreen) by the residues 169 to 192, the helix III (color=fushia) by the residues 198 to 227, the helix IV (color=grey)by the residues 232 to 252, the helix V(color=orangered) by the residues 264 to 288 the helix VI(color=blue) by the residues 305 to 319 and the helix VII (color = coral)by the residues 336 to 364.Besides, the helices III and VI are longer than the other helices. These seven transmembrane helices have a clockwise circular specific organisation (from helix I to helix VII) and form a bundle.
Concerning the extracellular faces, the three extracellular loops which connect the transmembrane helices are exposed and it is the same for the C-terminus domain. Besides, helices III and IV are longer than the other helices and as a result the C-terminal two turns of the helix VII protrude and are exposed too.
Concerning the extracellular faces, the three extracellular loops which connect the transmembrane helices are exposed and it is the same for the C-terminus domain. Besides, helices III and IV are longer than the other helices and as a result the C-terminal two turns of the helix VII protrude and are exposed too.
The seven transmembrane helices surround a large internal cavity where a zinc-binding site can be found. This cavity located from the cytoplasmic surface to the middle of the outer lipid layer of the membrane has small openings between the helices V and VI, and between the helices IV and VI. It has been assumed that these openings are involved in the entrance and exit of both substrate and product.
The seven transmembrane helices surround a large internal cavity where a zinc-binding site can be found. This cavity located from the cytoplasmic surface to the middle of the outer lipid layer of the membrane has small openings between the helices V and VI, and between the helices IV and VI. It has been assumed that these openings are involved in the entrance and exit of both substrate and product.

Revision as of 17:32, 14 January 2020

This Sandbox is Reserved from 25/11/2019, through 30/9/2020 for use in the course "Structural Biology" taught by Bruno Kieffer at the University of Strasbourg, ESBS. This reservation includes Sandbox Reserved 1091 through Sandbox Reserved 1115.
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References

  1. Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
  2. Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
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