Sandbox Reserved 1100

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 15: Line 15:
== STRUCTURE ==
== STRUCTURE ==
-
The Adiponectin receptor 1 is an integral membrane protein composed of 375 amino acids and its molecular weight is 42,4 kDa. This protein contains an internal <scene name='82/829353/N-terminus_domain/1'>N-terminus domain</scene> (residues 89 to 120), a short intracellular domain called <scene name='82/829353/Helice0/2'>helix 0</scene> (residues 121 to 129), <scene name='82/829353/7tm/1'>seven transmembrane helices</scene> (residues 134 to 364) and an external <scene name='82/829353/C-terminus_domain/1'>C-terminus domain</scene> (residues 365 to 375).
+
The Adiponectin receptor 1 is an integral membrane protein composed of 375 amino acids and its molecular weight is 42,4 kDa. This protein contains an internal <scene name='82/829353/N-terminus_domain/2'>N-terminus domain</scene> (residues 89 to 120), a short intracellular domain called <scene name='82/829353/Helice0/2'>helix 0</scene> (residues 121 to 129), <scene name='82/829353/7tm/1'>seven transmembrane helices</scene> (residues 134 to 364) and an external <scene name='82/829353/C-terminus_domain/3'>C-terminus domain</scene> (residues 365 to 375).
-
The organisation of the structure of the Adiponectin receptor 1 is the opposite to [[G protein-coupled receptor]] family. Indeed, the Adiponectin receptor has an internal <scene name='82/829353/N-terminus_domain/1'>N-terminus domain</scene> and an external <scene name='82/829353/C-terminus_domain/1'>C-terminus domain</scene> while the G-protein family has an internal N-terminus domain and an external C-terminus domain.
+
The organisation of the structure of the Adiponectin receptor 1 is the opposite to [[G protein-coupled receptor]] family. Indeed, the Adiponectin receptor has an internal <scene name='82/829353/N-terminus_domain/2'>N-terminus domain</scene> and an external <scene name='82/829353/C-terminus_domain/3'>C-terminus domain</scene> while the G-protein family has an internal N-terminus domain and an external C-terminus domain.
The Adiponectin receptor 1 contains <scene name='82/829353/7tm/1'>seven transmembrane helices</scene> linked thanks to three extracellular loops and three intracellular loops. The <scene name='82/829353/Helix1/1'>helix I</scene> is formed by the residues 135 to 157, <scene name='82/829353/Helix2/1'>helix II</scene> by the residues 169 to 192, the <scene name='82/829353/Helix3/1'>helix III</scene> by the residues 198 to 227, the <scene name='82/829353/Helix4/1'>helix IV</scene> by the residues 232 to 252, the <scene name='82/829353/Helice5/1'>helix V</scene> by the residues 264 to 288 <scene name='82/829353/Helix6/1'>heliX VI</scene> by the residues 305 to 319 and the <scene name='82/829353/Helix7/1'>helix VII</scene> by the residues 336 to 364 .Besides, the <scene name='82/829353/Helix3/1'>helix III</scene> and <scene name='82/829353/Helix6/1'>heliX VI</scene> are longer than the other helices. These <scene name='82/829353/7tm/1'>seven transmembrane helices</scene> have a clockwise circular specific organisation (from helix I to helix VII) and form a bundle.
The Adiponectin receptor 1 contains <scene name='82/829353/7tm/1'>seven transmembrane helices</scene> linked thanks to three extracellular loops and three intracellular loops. The <scene name='82/829353/Helix1/1'>helix I</scene> is formed by the residues 135 to 157, <scene name='82/829353/Helix2/1'>helix II</scene> by the residues 169 to 192, the <scene name='82/829353/Helix3/1'>helix III</scene> by the residues 198 to 227, the <scene name='82/829353/Helix4/1'>helix IV</scene> by the residues 232 to 252, the <scene name='82/829353/Helice5/1'>helix V</scene> by the residues 264 to 288 <scene name='82/829353/Helix6/1'>heliX VI</scene> by the residues 305 to 319 and the <scene name='82/829353/Helix7/1'>helix VII</scene> by the residues 336 to 364 .Besides, the <scene name='82/829353/Helix3/1'>helix III</scene> and <scene name='82/829353/Helix6/1'>heliX VI</scene> are longer than the other helices. These <scene name='82/829353/7tm/1'>seven transmembrane helices</scene> have a clockwise circular specific organisation (from helix I to helix VII) and form a bundle.
Concerning the extracellular faces, the three extracellular loops which connect the transmembrane helices are exposed and it is the same for the <scene name='82/829353/C-terminus_domain/1'>C-terminus domain</scene>. Besides, <scene name='82/829353/Helix3/1'>helix III</scene> and the <scene name='82/829353/Helix6/1'>heliX VI</scene>are longer than the other helices and as a result the <scene name='82/829353/C-terminus_domain/1'>C-terminus domain</scene> two turns of the ??? protrude and are exposed too.
Concerning the extracellular faces, the three extracellular loops which connect the transmembrane helices are exposed and it is the same for the <scene name='82/829353/C-terminus_domain/1'>C-terminus domain</scene>. Besides, <scene name='82/829353/Helix3/1'>helix III</scene> and the <scene name='82/829353/Helix6/1'>heliX VI</scene>are longer than the other helices and as a result the <scene name='82/829353/C-terminus_domain/1'>C-terminus domain</scene> two turns of the ??? protrude and are exposed too.

Revision as of 18:00, 14 January 2020

This Sandbox is Reserved from 25/11/2019, through 30/9/2020 for use in the course "Structural Biology" taught by Bruno Kieffer at the University of Strasbourg, ESBS. This reservation includes Sandbox Reserved 1091 through Sandbox Reserved 1115.
To get started:
  • Click the edit this page tab at the top. Save the page after each step, then edit it again.
  • show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
  • Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc.

More help: Help:Editing

Your Heading Here (maybe something like 'Structure')

Caption for this structure

Drag the structure with the mouse to rotate




References

  1. Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
  2. Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
Personal tools